PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 50075.9 Da PI: 8.4305 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.1 | 3.9e-07 | 262 | 284 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_010109934.1 262 HYCQVCGKGFKRDANLRMHMRAH 284 68*******************99 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00082 | 358 | 381 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C++C+ k Fs s+L++H + + XP_010109934.1 358 YVCKKCNrKEFSLLSDLRTHEKHC 381 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-7 | 262 | 323 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0034 | 262 | 284 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.83E-6 | 262 | 284 | No hit | No description |
PROSITE profile | PS50157 | 12.653 | 262 | 289 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 264 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 71 | 320 | 353 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.83E-6 | 353 | 379 | No hit | No description |
SMART | SM00355 | 15 | 358 | 380 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MNISGSDTSR YTNLSPAGLS LQMYSMADQD HHDDHDHHDQ VPSNSHLQPN NSTALGSLLY 60 SLSILKDKVH QLQSLVAILL SAAADSSASI ASINTQNAIH EIVMTASSML FNFQHTGVAS 120 TSGNPSTTHH DNNNDNNSPN PNIIGNAGLL SSSKSIGQGL IYPSTHDHHQ TVLDWYGSPH 180 DDQTYNNSTC TTSPIKENKF NSTTSNHMIM TQYSKDHRVE ENTFPLALGS ETKNGQGAVS 240 APKINQDIIE LGAADLLAKY THYCQVCGKG FKRDANLRMH MRAHGDEYKT SSALSNPMKR 300 INNDRIGNIN RDFSTASKKY SCPQGGCRWN QRHAKFQPLK SMICVKNHYK RSHCPKMYVC 360 KKCNRKEFSL LSDLRTHEKH CGDLKWQCSC GTTFSRKDKL LGHVSLFVGH TPVMMNDASS 420 STNNNNNNNK TTKVESQLVS HVDQIDGIVK MM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109934.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109934.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | W9S3S4 | 0.0 | W9S3S4_9ROSA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
STRING | XP_010109934.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 2e-87 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21395016 |