PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 164aa MW: 17922.9 Da PI: 5.0971 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 89.5 | 7.6e-28 | 11 | 125 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssasecea 75 +k++r++++hTkv+gR+ RvRl+a caar+ +L++eLG+++d++tieWLl+ a+ + ++ t +s s+s ce+ XP_010109477.1 11 SAKRSRSKDRHTKVSGRGCRVRLPAMCAARVSQLTRELGYKTDGQTIEWLLEHAQLPSIGAAATatctgngvvlggetnansslpPSCSESVCEK 105 5799**************************************************96666666565899999999887655543332222245555 PP TCP 76 esssssasnsssg......k 89 +++++++ +s s+ XP_010109477.1 106 KDHVVKKCHSFSRdqpafdF 125 55555544444443333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.6E-24 | 16 | 149 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 19.692 | 17 | 71 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MNSEISSTGP SAKRSRSKDR HTKVSGRGCR VRLPAMCAAR VSQLTRELGY KTDGQTIEWL 60 LEHAQLPSIG AAATATCTGN GVVLGGETNA NSSLPPSCSE SVCEKKDHVV KKCHSFSRDQ 120 PAFDFDLLTN FDMEFSANEI ALLQALTSET QEEEAEEEED KRKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109477.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109477.1 | 1e-119 | transcription factor TCP9 | ||||
Swissprot | O64647 | 3e-26 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | W9S2L7 | 1e-118 | W9S2L7_9ROSA; Uncharacterized protein | ||||
STRING | XP_010109477.1 | 1e-119 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-26 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21390895 |