PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Nin-like | ||||||||
Protein Properties | Length: 263aa MW: 30971.4 Da PI: 6.2444 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.5 | 3.4e-25 | 155 | 203 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++ ed++kyF+lpik+AAkeLgv++T LK++CR++ I RWPhRk ksl XP_010109249.1 155 ELESEDIQKYFDLPIKEAAKELGVGVTRLKKRCRELKITRWPHRKFKSL 203 7999*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.018 | 137 | 225 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.5E-22 | 156 | 203 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDYYSAQINL PQIEDYPLDF DWLYYDQQPF ENLLLDFPPV QSTFLEPNFL PLWSHNYGHQ 60 LPCIDFQDFE DFGGVFSLEI DNAFTHPNCE DTIVDEKPQT NLVTSFHHYN HHDMINIPSS 120 TDQLCSEVVP KMIIERKIIG STKSGKIGNY EKFSELESED IQKYFDLPIK EAAKELGVGV 180 TRLKKRCREL KITRWPHRKF KSLKYLISNV KKMGLDGNEI RMLEEHKRLL EEVPDMELTE 240 KTKKLRQACF KANYKNKRSL ARV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109249.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109249.1 | 0.0 | protein RKD4 | ||||
TrEMBL | W9SCI3 | 0.0 | W9SCI3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010109249.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-39 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21395110 |