PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108168.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 480aa    MW: 53724.2 Da    PI: 6.3299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108168.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19217315298
                     EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +k+l++sdv+++gr+vlpk+ aee     +   +e++++ ++d  s+++W+++++y  ++ks++yvl+ ++ +Fvk+ngL+ gD+v+++  ++++
  XP_010108168.1 217 KKELKNSDVGSLGRIVLPKREAEEKlpilS--DKEGIQVLIRDvYSNKEWSLRYKYwsNNKSRMYVLE-NTGDFVKQNGLEIGDSVTLY--EDEC 306
                     6899***********************643..447789999**7888*******99888888889999.********************..6699 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     ++l+v++ +
  XP_010108168.1 307 KNLFVSFKK 315
                     999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-25212324IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-21215311No hitNo description
PROSITE profilePS5086311.18216317IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-19216312IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.9E-21216317IPR003340B3 DNA binding domain
PfamPF023626.2E-16218316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MEKFPISSTS TSNVLSSSSA SNSMAANNDS NNNHNSQYCF SIYKPPNYCY QYPLQMQTLL  60
HQHQGLVQFP AGAGGQSFSV PGNFAVAVGG QNGSVKLGVA NPQSNVVSMS KEQEKRLFDA  120
WMTKAARSKR KLARQRSLTL SRSTSTSSSN SNSNSNPNYS STTTGVSLSQ RDSTRSEAVL  180
PISGTHFKNA DNKISTINRD LYNFCTPDKK RLRALLKKEL KNSDVGSLGR IVLPKREAEE  240
KLPILSDKEG IQVLIRDVYS NKEWSLRYKY WSNNKSRMYV LENTGDFVKQ NGLEIGDSVT  300
LYEDECKNLF VSFKKRERAE PSEASNKQLP ALSNQNTNDN NSPTSDDTDY SSDKTDQETD  360
YDNLYANFAH DELTRDEDEA FLALLIQQLN HKEQQLEANS LVTCGRWEES AKCDAPSHNY  420
NNDAVTGQET ANKSPPPLKI EAADDHLDDC YGSLGTLPEI DRYRYYSYAT LFDRIMSDKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A9e-492063123109B3 domain-containing transcription factor LEC2
6j9c_D9e-492063123109B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010108168.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029120.10.0B3 domain-containing transcription factor LEC2
TrEMBLW9SN800.0W9SN80_9ROSA; B3 domain-containing transcription factor LEC2
STRINGXP_010108168.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.15e-42B3 family protein