PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010108164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Dof | ||||||||
Protein Properties | Length: 348aa MW: 37605 Da PI: 8.3032 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.4 | 1.8e-39 | 21 | 81 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ XP_010108164.1 21 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 81 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 9.6E-34 | 23 | 79 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-27 | 24 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MASSSAGRIM EKPGQEQLQQ QQQALKCPRC DSSNTKFCYY NNYSLSQPRH FCKACKRYWT 60 RGGTLRNVPV GGGCRKNKRV KRPNNSSSSS SLPDHHHHSH NHNSSSSASS SPSSLLSSNP 120 ASSVQPQIDL SSNHHNHISP LFYGLANNAP NSDILSLQFS RFMSSTTSGY DLVQPQLNNV 180 LGLGFSSGIN NTTDYNGQNG FNSNSTSLLP SYSSIFSTPS SSPSPTIASL FASKFTNGGR 240 GSNHFPSLSS PFEEVRITGN NGESEMGLMK QVKLENGQRR FDWNGIADDN SCAAQNHDDD 300 HHQTVEQSLG LSSSSDPSLN YWSINPTAVG GANWHDPGSL GSSVPSLI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010108164.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108164.2 | 0.0 | dof zinc finger protein DOF1.4 | ||||
TrEMBL | W9S6X2 | 0.0 | W9S6X2_9ROSA; Dof zinc finger protein | ||||
STRING | XP_010108164.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 2e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21397625 |