PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107001.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 441aa    MW: 48717.6 Da    PI: 9.0311
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107001.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.72.5e-101311681954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  XP_010107001.1 131 FEHflHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVR 168
                     554458******************************88 PP
2BELL116.99.6e-38166772
            BELL  7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                    +kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  XP_010107001.1  1 MKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGVGSARTYTALALQTISKQFRCLKDAITGQI 66
                    69***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075269.0E-32163IPR006563POX domain
SMARTSM005742.4E-14164IPR006563POX domain
PROSITE profilePS5007112.357109172IPR001356Homeobox domain
SMARTSM003898.7E-10112176IPR001356Homeobox domain
CDDcd000863.51E-12112173No hitNo description
SuperFamilySSF466896.42E-17113178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28115178IPR009057Homeodomain-like
PfamPF059207.3E-19129168IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MKKAKLISML DEVEQRYRQY HHQMQIVISS FEQAAGVGSA RTYTALALQT ISKQFRCLKD  60
AITGQIRAAN KSLGEEDCLG GKIEGSRLKY VDHHLRQQRA LQQLGMIQQN AWRPQRGLPE  120
RSVSFLRAWL FEHFLHPYPK DSDKQMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYLE  180
EIKEQEQNGC AEKISKSNDD SDSKSTAPKE KSPASASATD NQTANFNSKQ ENSTAAAQFI  240
PSAISMSTPS TSPTGGNPPR NHSGFSLIGS SELDGITQGS PKKPRNDMMQ SPNSIPSITM  300
DVKPGKMGND HISSMKFGDE RQSRDGYSFM GGQTNFISGF GQYPIGEIGR FDAEQFTPRF  360
SGNGVSLTLG LPHCENLSLS GAHQSFVSNQ SIQLGRNIGE PNEYSAINTS APHSSAAAAF  420
ETINIQNPKR FAAQLLPDYV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16118176563Homeobox protein Meis2
3k2a_B4e-16118176563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107001.20.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-136BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLW9S6A30.0W9S6A3_9ROSA; BEL1-like homeodomain protein 1
STRINGXP_010107001.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-119BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]