PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106983.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 509aa    MW: 55106.7 Da    PI: 4.9958
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106983.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25.1e-141053346
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    i+n++ r+ +f kR+ng+ KK +EL +LC++ + ++i+++   +
  XP_010106983.1 10 IKNETSRKQSFKKRKNGLVKKVQELTTLCGVSAFIVIYGPGEDV 53
                    99*************************************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-18159IPR002100Transcription factor, MADS-box
CDDcd002661.98E-28184No hitNo description
PROSITE profilePS5006616.329148IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-7222IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-22292IPR002100Transcription factor, MADS-box
PfamPF003195.7E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72237IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MRRKIKLAWI KNETSRKQSF KKRKNGLVKK VQELTTLCGV SAFIVIYGPG EDVPTVWPSP  60
EEACHLMRRF RTVPQMERCK KMVNQESYLR ERSTKMKEQL QKLLRKNKER VTSYVMFEIG  120
EGKPLSQFHI SELNSVIWLL EEKMKETRRR LEFFRQPHNY YHRDQPAVAP GGGDDDDDDD  180
DDDGGDTASF SLPPPTTEEM TGLREFPWEL FYGKPLQGVQ PLDLNGYNFL AGGSLSAFSS  240
GGGGGSGSGG GGGESSSALQ AYNGDIFGLG YNSNGGNIEV NTNVGFQSYR NNNISTIPVF  300
GEGVNINLNN VSANNVGNEV DLGSYVFFGA GNSTNYVDTS TVGGMSVNDL GLAAPQVNFG  360
GLPINGENNQ HQMVIGSALE NPNYGHNNIG SGGENLGFGL QPGQGNYAGG NNFINSNMIN  420
YNIFHFGAGN DISGHGFLGQ TQENYQADNG NNGGNINGYG YAGIGEIGAQ ISPEMLMFQS  480
NGNGTTNGGN AAAEQSSSGE FGKYWSGFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123RRKIKLAWIKNETSRKQSFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106983.10.0uncharacterized protein LOC21399937
TrEMBLW9RVR10.0W9RVR1_9ROSA; Agamous-like MADS-box protein AGL36
STRINGXP_010106983.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.11e-33AGAMOUS-like 36