PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106725.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 267aa    MW: 30437.9 Da    PI: 6.0625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106725.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.2e-131562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  ++k++   +W+  ++  g+ Rt+k+c++rw +yl
   XP_010106725.1 15 KGAWSPEEDRKLTAYIKRYKIWNWTEMSKAAGLARTGKSCRLRWVNYL 62
                     79******************99************************97 PP
2Myb_DNA-binding51.72.1e-1668114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++ +++ lG++ W++Ia++++ gRt++++k++w+++l
   XP_010106725.1  68 RGNFSKEEEDTIITLHETLGNR-WSAIAAKLPSGRTDNEVKNYWHTHL 114
                      89********************.**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4311062IPR017930Myb domain
SuperFamilySSF466892.35E-2612110IPR009057Homeodomain-like
SMARTSM007176.4E-101464IPR001005SANT/Myb domain
PfamPF002493.8E-111562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-221669IPR009057Homeodomain-like
CDDcd001673.16E-81762No hitNo description
PROSITE profilePS5129424.99763118IPR017930Myb domain
SMARTSM007171.1E-1667116IPR001005SANT/Myb domain
PfamPF002492.2E-1568114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2670119IPR009057Homeodomain-like
CDDcd001676.10E-1070114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVKTSSSTEK TPLKKGAWSP EEDRKLTAYI KRYKIWNWTE MSKAAGLART GKSCRLRWVN  60
YLRPDIKRGN FSKEEEDTII TLHETLGNRW SAIAAKLPSG RTDNEVKNYW HTHLKKRLKA  120
DSTSSTSVIP ELQEAGDEAS WKNLSESDVL ASPEPAKSIS KIDDSKNTVV SPQQPITSST  180
GPANFEIGKD QKIVNEGINI DKTSSHETFI EELQSLWSQQ GDFFYPPPDD QLIGPSTNSP  240
IWQYDFYKEF DDCYDWVHYM DKTFGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24131185108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106725.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106725.10.0transcription factor MYB4
TrEMBLW9SJG00.0W9SJG0_9ROSA; Myb-related protein Myb4
STRINGXP_010106725.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-53myb domain protein 15