PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010106446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | WOX | ||||||||
Protein Properties | Length: 290aa MW: 32094.4 Da PI: 8.2113 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1e-20 | 25 | 84 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+++Le l+++ r+psae++++++++l +++ ++V++WFqN++a++++ XP_010106446.1 25 SRWNPTKEQINILEGLYRQgIRTPSAEQIKQITSRLrtfgHIEGKNVFYWFQNHKARQRQ 84 7*****************99**************************************96 PP | |||||||
2 | Wus_type_Homeobox | 115 | 3.8e-37 | 23 | 86 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 a++RW+Pt+eQi+iLe ly++G+rtP++e+i++it++L+++G+ie+kNVfyWFQN+kaR+rqkq XP_010106446.1 23 ASSRWNPTKEQINILEGLYRQGIRTPSAEQIKQITSRLRTFGHIEGKNVFYWFQNHKARQRQKQ 86 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.803 | 20 | 85 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-13 | 21 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-4 | 22 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-18 | 25 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-8 | 25 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.32E-6 | 26 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEADNGESNI GAGSSSGSGA PPASSRWNPT KEQINILEGL YRQGIRTPSA EQIKQITSRL 60 RTFGHIEGKN VFYWFQNHKA RQRQKQKQEN MAYINRFLHR TPQPFFPPSH QLPYPNVVCG 120 PYYVPVESQT DHHHTATAFR QQYHPNKMSL SNGVKRRSPI RLDKSENIST GTISCAVGTG 180 YEPVREDYYG YKSTISSSCF DEGVRNNKLI MSTSSCNQET LALFPLSPTG VLKAGSEEEN 240 PDHGSSGFFD TEINPSTSNG STPASSSSGV EEGRCSSAGL GQTFYDFFSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010106446.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106446.1 | 0.0 | WUSCHEL-related homeobox 2 | ||||
TrEMBL | W9S253 | 0.0 | W9S253_9ROSA; WUSCHEL-related homeobox 2 | ||||
STRING | XP_010106446.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 7e-51 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21407910 |