PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104475.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 428aa    MW: 48023.3 Da    PI: 6.0194
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104475.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-081130525
                    --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                    +C f+++ G+C yG+rC++ H
  XP_010104475.1 11 ICTFYQK-GFCAYGSRCRYQH 30
                    7******.************* PP
2zf-CCCH19.32e-06114136326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  XP_010104475.1 114 HPICS-FAAAGDCPRGEKCPHIHG 136
                     57899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.61633IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5732IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-5830IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-51030IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-61130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512111138IPR000571Zinc finger, CCCH-type
SMARTSM003560.0093112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.06E-13167244No hitNo description
Gene3DG3DSA:3.30.40.109.1E-10173239IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001629.07E-4179239No hitNo description
PfamPF000971.9E-7180237IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.357180238IPR001841Zinc finger, RING-type
SMARTSM001842.9E-7180237IPR001841Zinc finger, RING-type
PROSITE patternPS005180204213IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.064267295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169267296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MCVFSGLSSQ ICTFYQKGFC AYGSRCRYQH IKPSQSQSFT PSSSTSSQQT PVSDPSCTSS  60
SGVALVPGAL TELSASGRTS VLPKQPVWKK KYDQHEFLED EDVGEPTSLR PADHPICSFA  120
AAGDCPRGEK CPHIHGDLCP TCGKRCLHPF RPEEKEEHLK MCEKKQKHLE ALQHSQEIEC  180
SVCLERVLSK PTAAERKFGL MSECDHPFCI SCIRNWRNSS PTSGLDVNSA LRACPICRKL  240
SYFVVPSVIW YTTKEEKQEI VDSYKSKLKS IDCKHFDFGN GNCPFGTSCF YKHMVRPGSY  300
VWKYHRPPPR RPTPRRSDAV DNMEQAVDLD TIIEMGDLLE DLMDCYIPGE DDLDFDEDID  360
PLNNLSHFEM AFILSQMGTN EIDSSSDDDI VSGEALPYMW QYNKSCMANG TPIGPKLLLG  420
SSDTPRMR
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026597.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA071e-125C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLW9SPR30.0W9SPR3_9ROSA; E3 ubiquitin-protein ligase makorin
STRINGXP_010104475.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-119C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]