PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104373.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARR-B
Protein Properties Length: 596aa    MW: 66231.6 Da    PI: 5.9756
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104373.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.4e-28345399156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  XP_010104373.1 345 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 399
                     5689*****************.********************************96 PP
2Response_reg39.43.2e-14201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++++ ++ +r++le  +y +v ++ + +eal  +  k   ++l ++ ++ ++ +G  ++k +++++ +lpii+ +  +  +++ +++ +G
  XP_010104373.1  20 VLVLDEDRNSASEIRSMLETMDY-IVSTFCNETEALSAFSSKPesFHLAIVEVNTSNGNG--TFKFLETAK-ELPIIMTSNIQCLSTMMKCIALG 110
                     7999*******************.***************766666******999988777..578887777.9****9999999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++++l++
  XP_010104373.1 111 AVEFLRKPLSEDKLRN 126
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.4E-1716134No hitNo description
SuperFamilySSF521722.7E-1716134IPR011006CheY-like superfamily
SMARTSM004480.001218128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011022.84619132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-1020127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.45E-1121131No hitNo description
PROSITE profilePS5129415.597342401IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-27343401IPR009057Homeodomain-like
SuperFamilySSF466891.43E-18344402IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25345400IPR006447Myb domain, plants
PfamPF002491.1E-8348397IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MVCTANDLQE WKDFPKGLRV LVLDEDRNSA SEIRSMLETM DYIVSTFCNE TEALSAFSSK  60
PESFHLAIVE VNTSNGNGTF KFLETAKELP IIMTSNIQCL STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKVLELVT YVPIFHESVL KIPFSDCVNA EQAFNAGGGV LSEPLKPVKE  180
SPAFMLHVDM ENGDPDKKIL NERENSSEIQ ENDHEQSTGS DKYPAPSTPQ LKQGARLLDD  240
GDCQDHTNCS PEKESGEQDG ESKSVETTLG DSVAEATLLV DQPEMPSKLI VKEEEESVDG  300
TKNESNMSSK LKHGDSQRKV NGSAENPTKA SGLNNSSLSK SNRKKMKVDW TPELHKKFVQ  360
AVEQLGVDQA IPSRILELMK VEGLTRHNVA SHLQKYRMHK RHILPKEDDR RWPRPPDTVQ  420
RNYYPQQPIM AYPSYHSNHA VPVPPVYPMW GQPGSHPTGV QVWGPPAYPP WQPAESWHWK  480
PYPGMNADAW GCPVMPPPHG PYASYPQNAS GFHNVGVFDN GCNTPHNSFD LYPAEEVIDK  540
VVKEAINKPW LPLPLGLKPP SADSVLSELS RQGISKIPPN LNGSNSICKG TGSNHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-17350399655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104373.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026471.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024026472.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024026473.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-145APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLW9RZ290.0W9RZ29_9ROSA; Two-component response regulator-like protein
STRINGXP_010104373.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-142ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]