PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010104324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 275aa MW: 29593.5 Da PI: 6.2753 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H XP_010104324.1 99 YTCAFCRREFRSAQALGGHMNVH 121 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.26E-6 | 96 | 126 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MATEFGLLSL THLHNLAQNQ DQNQDQLNPN ITINNTSTTS SNITTTSTSA TIGTTCTDIA 60 SRMWNPKPHQ AEEDDSWEVR AFAEDTGNVM GMTWPPRSYT CAFCRREFRS AQALGGHMNV 120 HRRDRARLHQ VIPPNSIINH PSAAATAAVA AATAATSSST PTSSSFLIPT GEFVAGGGGL 180 CLLYQLPNPN GAYGCSESPS PSTVPSVSSY PPHNLLRPPF APSVNFRPGG YNNARRSRHD 240 QYHPNRAEEA LESAENGGDE ELDLELRLGH GPTPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 94 | 121 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 94 | 121 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010104324.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026489.1 | 1e-144 | transcriptional regulator SUPERMAN | ||||
TrEMBL | W9RN63 | 0.0 | W9RN63_9ROSA; Transcriptional regulator SUPERMAN | ||||
STRING | XP_010104324.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3525 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-30 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21406044 |