PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102390.1
Common NameDREB4D
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 249aa    MW: 26596.6 Da    PI: 6.3595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102390.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-1965115155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_010102390.1  65 PVYRGVRMRN-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALSIKG 115
                     68*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-1365115IPR001471AP2/ERF domain
SMARTSM003804.2E-3766129IPR001471AP2/ERF domain
PROSITE profilePS5103223.43366123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-3266124IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2166124IPR016177DNA-binding domain
PRINTSPR003672.6E-106778IPR001471AP2/ERF domain
CDDcd000182.16E-3267125No hitNo description
PRINTSPR003672.6E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSTTSETTES SSNSSTSTST SSSPQSPSSV CPTPPPPPPP PPPSDEANKN SKICKRMRSD  60
SSKHPVYRGV RMRNWGKWVS EIREPKKKSR IWLGTFPTPE MAARAHDVAA LSIKGSSAIL  120
NFPHLAGSLP RPASLAPRDV QAAAAKAAQM HKLDGSQTAA TAVTTTSSSS ALLSASSSAT  180
TTSFVLSEEL SEIVELPSLG TSYESAELGT EFVFVDSEDG WVYPPPWLQS VRDHELISTG  240
FEGLLWSDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2058124673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783910.0KF678391.1 Morus notabilis dehydration responsive element binding transcription factor (DREB4D) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102390.11e-179ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-72DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLW6FFW11e-178W6FFW1_9ROSA; Dehydration responsive element binding transcription factor
STRINGXP_010102390.11e-178(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]