PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102146.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 294aa    MW: 33294.1 Da    PI: 7.2583
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102146.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-12152177126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_010102146.1 152 YQPDICKDYKETGYCGYGDSCKFMHD 177
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9149182IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878151179IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10152177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12152182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.6E-12223281IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139203.7E-8233274No hitNo description
SuperFamilySSF578508.43E-12233277No hitNo description
SMARTSM001840.0029234271IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.217234272IPR001841Zinc finger, RING-type
CDDcd001628.13E-7234275No hitNo description
PROSITE patternPS005180249258IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMMMKNQNPR PHSCTARKKS QSPTINFTTG TSKNSAFVES NVVSDTPVFQ FESSKEIQVQ  60
HDSRATATLE IETELSKDAR AIRERVLKNA KEALKGKGKN TGDEKLYKGI HGYTDYKAGF  120
RREQTVASEK AGGSHGPLRA SAHIRATARF DYQPDICKDY KETGYCGYGD SCKFMHDRGD  180
YKSGWQLEEW EEAEKLRKRN LALGGADPDE GGADQNDDVD DDDDDDEDSL PFACFLCRQP  240
FVDPIVTKCR HYFCEHCALK HHSKNKKCFV CNTPTLGIFN TAHEIRKKMA EERR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M7e-6462293113321RING finger protein 113A
5z58_M7e-6462293113321RING finger protein 113A
6ff4_t7e-6462293113321RING finger protein 113A
6ff7_t7e-6462293113321RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103154.11e-168zinc finger CCCH domain-containing protein 1
RefseqXP_024025696.11e-168zinc finger CCCH domain-containing protein 1
RefseqXP_024025697.11e-168zinc finger CCCH domain-containing protein 1
RefseqXP_024025698.11e-168zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-138C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLW9RQH50.0W9RQH5_9ROSA; Zinc finger CCCH domain-containing protein 1
STRINGXP_010102146.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-140C3H family protein