PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101053.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 469aa    MW: 51798 Da    PI: 7.5444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101053.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-1658102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE+ ++++a k++G   W++I +++g ++t+ q++s+ qk+
   XP_010101053.1  58 RERWTEEEHRKFLEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 102
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.66E-1752106IPR009057Homeodomain-like
PROSITE profilePS5129421.08553107IPR017930Myb domain
TIGRFAMsTIGR015574.0E-1756105IPR006447Myb domain, plants
SMARTSM007176.4E-1357105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-95898IPR009057Homeodomain-like
PfamPF002498.0E-1458101IPR001005SANT/Myb domain
CDDcd001676.58E-1160103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEGSTVSTAA AVQECDNGGS VFPSGNAISL SVQLKDHFSC GNDYSPKVRK PYTITKQRER  60
WTEEEHRKFL EALKLYGRAW RKIEEHVGTK TAVQIRSHAQ KFFYKVARDP NGGNTNSEDP  120
IEIPPPRPKR KPMHPYPRKL VDSPKKEIPL AEHTTSALSP NLSLSEQENQ SPKSVLFAMG  180
SDTIGSGGSD TPDGSLSPVS SAPGIHDGSF IISEPNPSSE FSRSPPAATV SVPDVRFPMK  240
LESSSQDTAY VKESAAEEVC ARSLKLFGMT VLVTDSQRPS SPTTETCEPP PQSDAHNEIP  300
AQQLQQYSTT MESSAENANR VWGHLPTEVQ ALYLMHLRNE NSNLARPGSA TPMPLWPYYG  360
GLPFPFVPCN KPEPVKGALD SKLGKGQDKC SDLDTRSRYS SSEKEAKEPE LGFKLKPSSR  420
SAFSQLRVRT DKCRKGFVPY KRSTTAEEET QSSIITSEER EERRIHLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101053.10.0protein REVEILLE 1
TrEMBLW9REF00.0W9REF0_9ROSA; Myb-like protein G
STRINGXP_010101053.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-50MYB_related family protein