PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010100832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 445aa MW: 49022.6 Da PI: 6.9784 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 115 | 164 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_010100832.1 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.7 | 1.4e-13 | 207 | 257 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + + k+++lg f+++ eAa+a+++a+ k +g XP_010100832.1 207 SKYRGVTLHK-CGRWEARMGQF----MGkKYVYLGLFDSEIEAARAYDKAAMKCNG 257 89********.7******5554....224**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.3E-16 | 115 | 174 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-9 | 115 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-17 | 116 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.23E-12 | 116 | 174 | No hit | No description |
SMART | SM00380 | 1.1E-31 | 116 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.622 | 116 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.38E-24 | 207 | 267 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-16 | 207 | 265 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-9 | 207 | 257 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-15 | 208 | 265 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.606 | 208 | 265 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-31 | 208 | 271 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-6 | 209 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-6 | 247 | 267 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MLDLNLSVAS SDTASDSAEK LLESSFSFDD DYYCSSSSDV DRVRTIDLFP ITGGGPSEKE 60 KNSSSSSRRE WLGLSTNATA SFCEGSFGGP TPAAVAAPQP AAMKKSRRGP RSRSSQYRGV 120 TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGLEADIN FNISDYEEDI 180 KHMSNFSKEE FVHILRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFMGK KYVYLGLFDS 240 EIEAARAYDK AAMKCNGREA VTNFEPALYD VEMMSEAECE GGNQNLDLNL GIAPLSLSNG 300 PKENVETSGF YLEQVHMRER IENFSTARAK MPHGSRIASE HCSIIGGMNA SFFPNDMERA 360 TERGVDVDSL PNWAWQIQGR AAAPPVPAPL FCTAASSGFP SPSATSLPSS AANSQLHFPN 420 LPILHHHFPP SIANTTNLPH FYCRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010100832.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010100832.1 | 0.0 | floral homeotic protein APETALA 2 | ||||
Swissprot | B8AMA9 | 1e-106 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | W9RE03 | 0.0 | W9RE03_9ROSA; Floral homeotic protein APETALA 2 | ||||
STRING | XP_010100832.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-100 | related to AP2.7 |
Link Out ? help Back to Top | |
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Entrez Gene | 21387371 |