PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010100715.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19816.8 Da PI: 6.5017 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.8 | 8.7e-39 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++C+l+pyfp e+ +kfa+vhk+FGasnv+k+++ l+ee+reda++++vyeA ar+rdPv G++g+i++lq+ +++l+++l+ XP_010100715.1 16 PCAACKMLRRRCDNNCALSPYFPTEEIEKFACVHKVFGASNVIKMIQMLEEERREDAVKAIVYEAMARVRDPVCGSAGIIFHLQKMVHELRSQLE 110 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ XP_010100715.1 111 TTTAQ 115 98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.293 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-38 | 16 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
METGQVPLAR SRVNQPCAAC KMLRRRCDNN CALSPYFPTE EIEKFACVHK VFGASNVIKM 60 IQMLEEERRE DAVKAIVYEA MARVRDPVCG SAGIIFHLQK MVHELRSQLE TTTAQVSELR 120 AQRDQLQGIL MNAHVDPLFY AHNRTSQDDH QTIAYDPMMI SFPNLDQMEP FNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 14 | 129 | 9 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 14 | 129 | 9 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010100715.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010100715.1 | 1e-129 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-39 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | W9RLJ3 | 1e-127 | W9RLJ3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010100715.1 | 1e-128 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14068 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-42 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Entrez Gene | 21406245 |