PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010100685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 182aa MW: 20631 Da PI: 7.6779 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.4 | 5.1e-13 | 17 | 48 | 25 | 56 |
--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ +LA++lgL+ rqV +WFqN+Ra++k XP_010100685.1 17 LEPRKKVQLASELGLQPRQVAIWFQNKRARWK 48 6678899************************9 PP | |||||||
2 | HD-ZIP_I/II | 94.5 | 1.1e-30 | 13 | 86 | 20 | 93 |
HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++++Lep++Kv+la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L + y++l+++ e+L+ke+++L +l++ XP_010100685.1 13 TKTRLEPRKKVQLASELGLQPRQVAIWFQNKRARWKSKQLERDYSILLADYNSLASRFEALKKEKQSLVLQLQK 86 4669****************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 7.4E-5 | 7 | 54 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-12 | 16 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-10 | 17 | 48 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-13 | 17 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.42E-9 | 19 | 51 | No hit | No description |
PROSITE profile | PS50071 | 12.374 | 20 | 50 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.9E-6 | 21 | 30 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 25 | 48 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.9E-6 | 30 | 46 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.0E-14 | 50 | 89 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MTHPSQPPSA RSTKTRLEPR KKVQLASELG LQPRQVAIWF QNKRARWKSK QLERDYSILL 60 ADYNSLASRF EALKKEKQSL VLQLQKLNND VKQRPREESE NEKAAKSESE AKPSSSIEKS 120 EHVLGVLSDD DSNRKAEYFG LEDQQELLNM NMAEPKPADS SPENWGSLNS ETLFNESSGG 180 VS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00013 | PBM | Transfer from AT3G61890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010100685.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024024137.1 | 1e-127 | homeobox-leucine zipper protein ATHB-12 | ||||
Swissprot | Q9M276 | 5e-46 | ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | W9RLG5 | 1e-128 | W9RLG5_9ROSA; Homeobox-leucine zipper protein ATHB-12 | ||||
STRING | XP_010100685.1 | 1e-129 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 9e-44 | homeobox 12 |
Link Out ? help Back to Top | |
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Entrez Gene | 21406215 |
Publications ? help Back to Top | |||
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