PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097793.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 609aa    MW: 68666.5 Da    PI: 4.8891
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097793.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.64.2e-892306071374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl........f 84 
                     lvelLl+ Ae v+s++ e a++l++   +l+s++g+p+qR++ yf e+L++++ r++ ++     ++   +++       +  ++l        +
  XP_010097793.1 230 LVELLLASAEKVESQQYESASRLVNLCDHLSSNTGNPVQRVVYYFCEGLKEKIDRETGRIGGVS-SKGLGKSHklfD---IDNTSLvpcmptiaL 320
                     689****************************************************777776444.444333342342...22222223346667* PP

            GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     ++  P+++   ++a qaI+e++ ++++vH+iD+ i  G+QW a ++ LasR+e+p   l+iT+++  ++  ++ +ee g+ L++fA+++++pf+f
  XP_010097793.1 321 HQGQPLFRAEKVAAVQAIVESIGEAKKVHVIDLRIAFGMQWTAVMEVLASRRENPIeLLKITAIAG-TTAPRHVIEEAGRWLENFASNMKIPFSF 414
                     *************************************************9996655499******9.668************************* PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                     +v++++++ +l+ + ++++++E+laV +++ l +l +++++les    ++++++sl+P v+vv e ea+hn + F++rf+eal +y ++fd+lea
  XP_010097793.1 415 KVVMMEDVLSLKEDLFELDTEETLAVYSSYGLRSLISQPTQLES----LMRVIRSLNPCVMVVNEVEANHNCPAFVNRFIEALFFYGTFFDCLEA 505
                     ************************************99999999....*********************************************** PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                     +l +++ +r   E  + gr+i+n+va+eg+er+ rh + + Wr+ + ++G+++++ls +  +qak+ l++++ +   +++ + ++l++gWk+ pL
  XP_010097793.1 506 SLKHDDTNRLIFESLYCGRSISNLVAAEGEERKIRHVKIHVWRAFFARFGMEELELSPSSIQQAKMALKNFPcGSSCTLDMSGKCLMMGWKGTPL 600
                     ************************************************************************9999******************* PP

            GRAS 368 vsvSaWr 374
                      s+SaW+
  XP_010097793.1 601 SSLSAWK 607
                     ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.468204586IPR005202Transcription factor GRAS
PfamPF035141.4E-86230607IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MSFNSDLQNS MFSSEDFNFQ EIQDPQISSI HTMEEMNNNQ VHFYGDEDWG DFGVNPSFSF  60
DYGYNQDENL AGEFFSSKYH SQDQHQQSNS VHEMLGDPEY DVGPPSLEAC LEEISTKIGD  120
ETNPNAAQHV GVKKSKEYPF SLAALELLNS YGSGFKRLKG QRIIEPINHG NHSNSFTEVV  180
AADRKFSTEE ILRIAGARFI QSYSQQENYN HPFEWSFSGL SNEEIKDVEL VELLLASAEK  240
VESQQYESAS RLVNLCDHLS SNTGNPVQRV VYYFCEGLKE KIDRETGRIG GVSSKGLGKS  300
HKLFDIDNTS LVPCMPTIAL HQGQPLFRAE KVAAVQAIVE SIGEAKKVHV IDLRIAFGMQ  360
WTAVMEVLAS RRENPIELLK ITAIAGTTAP RHVIEEAGRW LENFASNMKI PFSFKVVMME  420
DVLSLKEDLF ELDTEETLAV YSSYGLRSLI SQPTQLESLM RVIRSLNPCV MVVNEVEANH  480
NCPAFVNRFI EALFFYGTFF DCLEASLKHD DTNRLIFESL YCGRSISNLV AAEGEERKIR  540
HVKIHVWRAF FARFGMEELE LSPSSIQQAK MALKNFPCGS SCTLDMSGKC LMMGWKGTPL  600
SSLSAWKYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3326060733375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097793.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097793.10.0DELLA protein RGL1
TrEMBLW9R5K10.0W9R5K1_9ROSA; Uncharacterized protein
STRINGXP_010097793.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-48RGA-like 1