PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097792.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 527aa    MW: 60124.6 Da    PI: 5.5168
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097792.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.41.1e-851535251374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPil 91 
                     lvelLl+ Ae v++++ e a+++L+   +l+s++g+p+qR++ y+ eAL++++ +++ e++ + + ++ ++ ++ ++l +  +    f++  P+ 
  XP_010097792.1 153 LVELLLASAEKVENQQYESARRFLNLCGHLSSNTGNPVQRVVYYLCEALKEKIGKETGEIAWKGKGKNHRSFDVNKALVVPDApklaFHKGLPFS 247
                     689****************************************************99999988888888777766666665445558******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     +   ++  qaI+e v ++++vH+iD+ i++G+QW aL+qaL sR   +   l+iT+++    +sk+++eetg+ L++fA+++++pf+f+++++ +
  XP_010097792.1 248 QAEKFAGIQAIVEKVGEAKKVHVIDIRIGNGVQWTALMQALVSRHdCQLELLKITAIVT---SSKHAIEETGKWLSNFASTMNIPFSFKIVMVPN 339
                     *********************************************556779*******9...589*************************9999* PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ++dl+ + ++++ +E++aV +++ l  + +++++les    +++++++l P v+vv+e ea+hns+ F++rf+e l ++ ++fd++ea + r++ 
  XP_010097792.1 340 MSDLKEDLFELDADETIAVYSSFTLSGMIAQPTQLES----LMRVIRGLHPCVMVVTEVEANHNSPVFVNRFIEVLFFFGTFFDCVEAFMERDEP 430
                     *************************************....****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r   E+ +  ++ +n+va e +er+ rh +   Wr+ +e++G+++++ls + + qakl+ ++++ +   + + + ++l++gWk+ p+ s+S+W+
  XP_010097792.1 431 NRLIFEELYCFEAMRNIVAFEREERKIRHVKIDVWRAFFERCGMEELELSLSSTYQAKLVTNNFPfGSSCTFDMDGKCLLMGWKGSPIQSLSVWK 525
                     *****************************************************************88889999*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.021127504IPR005202Transcription factor GRAS
PfamPF035143.8E-83153525IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MQDFTFEEIQ DLLGHTDEHQ RSMEFAFDGF QDDRMVYDPQ YDAVSPPHQA LTEESTKHDI  60
GVKKEYPFSL AAFEILKNHG NRFKRLTGRR IVEANNDITT LNEVAADRKL STEEILRIAG  120
ERFIQYSSQQ ATSHPFQASF SGLSYEETKN VELVELLLAS AEKVENQQYE SARRFLNLCG  180
HLSSNTGNPV QRVVYYLCEA LKEKIGKETG EIAWKGKGKN HRSFDVNKAL VVPDAPKLAF  240
HKGLPFSQAE KFAGIQAIVE KVGEAKKVHV IDIRIGNGVQ WTALMQALVS RHDCQLELLK  300
ITAIVTSSKH AIEETGKWLS NFASTMNIPF SFKIVMVPNM SDLKEDLFEL DADETIAVYS  360
SFTLSGMIAQ PTQLESLMRV IRGLHPCVMV VTEVEANHNS PVFVNRFIEV LFFFGTFFDC  420
VEAFMERDEP NRLIFEELYC FEAMRNIVAF EREERKIRHV KIDVWRAFFE RCGMEELELS  480
LSSTYQAKLV TNNFPFGSSC TFDMDGKCLL MGWKGSPIQS LSVWKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3318352533375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097792.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097792.20.0DELLA protein RGL1
TrEMBLW9R5C50.0W9R5C5_9ROSA; Uncharacterized protein
STRINGXP_010097792.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-48RGA-like 1