PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097684.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 258aa    MW: 29052.5 Da    PI: 10.1805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097684.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.8e-171152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+s r+ tf kR++g++KK +ELS+LCd++++ ii s+ +
  XP_010097684.1 11 ITNDSARKATFKKRKKGLIKKVSELSTLCDVDACAIICSPYN 52
                    89************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.002149IPR002100Transcription factor, MADS-box
CDDcd002663.63E-20285No hitNo description
SuperFamilySSF554558.63E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-181152IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTRTKVKLAY ITNDSARKAT FKKRKKGLIK KVSELSTLCD VDACAIICSP YNAQPEVYPS  60
SSGVQRVLAK FKKMPEMEQS KKMVNQESFL RQKIAKANEQ LKKQRKENKE KEITHVMFQS  120
LTGAKGLQGL SVQDLKDLGW MIEQKLKDIN KRMERIGDSR LLSTQGGCKA RVVAVQAATI  180
TAEEKPRSCN GESATLVATG AVERPPEFET NGDSNMQRQL QWFMDMINVP QQHQHVGFGR  240
EDVLSFGESG HWPNGFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097684.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-64AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLW9RTN90.0W9RTN9_9ROSA; Agamous-like MADS-box protein AGL80
STRINGXP_010097684.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-66AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]