PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097078.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 567aa    MW: 62848 Da    PI: 6.1967
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097078.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.9e-094845221854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e++ LA k gLt +qV++WF N R +
  XP_010097078.1 484 MFQNflHPYPKDAEKQLLAVKSGLTRNQVSNWFINARVR 522
                     5887779******************************88 PP
2BELL84.99.6e-28356424271
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                     r++++ kkakLl ll++Vd+rY+q+ ++++tvis+F+a+++l++ ++++++Al++iS  +++L+++i++q
  XP_010097078.1 356 RRAIETKKAKLLALLQMVDDRYNQCLDEIHTVISAFHAATELDP-QIHARFALQTISILYKSLRERISNQ 424
                     7899****************************************.**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.4E-32277423IPR006563POX domain
PfamPF075265.7E-27282422IPR006563POX domain
PROSITE profilePS5007111.224463526IPR001356Homeobox domain
SMARTSM003891.2E-6466530IPR001356Homeobox domain
CDDcd000863.35E-11466527No hitNo description
SuperFamilySSF466891.84E-15468535IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-25469532IPR009057Homeodomain-like
PfamPF059205.7E-15483522IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MENQMFNISS PDMASRNSLV MDGISPHSTM NSLVQSYSFD HSSDLHVTNQ AENIVSPNAF  60
YTYKRNVARD ASLGSSSAAA NCEFQETPES AVTIAAYVAA KGGLQENLNN LAISVMPQMY  120
SAEVLADFVQ NNCSNTSNSR FPTSMNGGND EVLGIINSQW DIQKYPASLE LVGKSSSEFH  180
PYSSTGNLAP NGWISPDSAS LTTVHSYGSS KFSNELSLTL ATSQPSAITG MNIPGQCSDM  240
SCSAVAHNSS NETMLGSDQT SCNSEELSLS FGSYRPPQFS QVILGSQYLC AVQEILAQIA  300
SFSLENVDHA NYLNASLAIN TPFSSNCSAQ REISLMDPSD GGSRPEGGEV DPALHRRAIE  360
TKKAKLLALL QMVDDRYNQC LDEIHTVISA FHAATELDPQ IHARFALQTI SILYKSLRER  420
ISNQCLAMGS SFDPSCSGDT ERSFETSFIQ KQWALQQLKK KEHQLWRPQR GLPERSVSVL  480
RAWMFQNFLH PYPKDAEKQL LAVKSGLTRN QVSNWFINAR VRLWKPMIEE MYAEMNRRKS  540
RRNENMTESN NQRSRTSTSN NQRYNVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14472530563Homeobox protein Meis2
3k2a_B1e-14472530563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097078.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097078.20.0homeobox protein ATH1
RefseqXP_024021825.10.0homeobox protein ATH1
SwissprotP487311e-110ATH1_ARATH; Homeobox protein ATH1
TrEMBLW9RE350.0W9RE35_9ROSA; Homeobox protein ATH1
STRINGXP_010097078.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-106homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]