PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097024.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 518aa    MW: 55590.5 Da    PI: 8.7896
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097024.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19271305135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010097024.1 271 CQHCGADKTPQWRAGPYGPKTLCNACGVRYKSGRL 305
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-16265319IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.965265301IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-14265327No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14269303IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.04E-16270318No hitNo description
PROSITE patternPS003440271296IPR000679Zinc finger, GATA-type
PfamPF003204.4E-17271305IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MESLDSEPCF VDELLNFSSD MDEEDDNKPR KALASSLRPN GLLGPAGDSV RPFHVSLALC  60
FLVFFPFGRD RVLFGGDSAE SSQGFCLFWL GNESTRLGRA NIPPARVDST RSILRLGRFY  120
GGGGHDTNED WVELVEEELE WISNKDAFPA VESFVGILPD NPSGAILKHH SPVSVLDGGS  180
GGSSTISCNS NSNCSNSSSS IATLTSCFSS LKAPRRARSK RRCRRRGGDI TGRQLCWSQA  240
NNNNNNESFT GYEKATRKTT TMTTTIIGRK CQHCGADKTP QWRAGPYGPK TLCNACGVRY  300
KSGRLVSEYR PASSPTFSSE LHSNSHRKIL EMRRTKQMMG MVVVAFDNAL KVAQAAAFDN  360
ALKVAQAAAF DNALKVAQAA TFHNPLKVAQ EAAFHDALKA ASFDNTLKLA QAAAFDNALK  420
GAQTAAFDNA LKVAQATAFD NALKVAQSAA FDNTLKVSQV AAFGNVLKVP QTSAFGNALK  480
VAQTSAFDNA LKVAQAPAFD NALKVAQAAA FDNTGSRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021768.11e-111GATA transcription factor 1
RefseqXP_024021769.11e-111GATA transcription factor 1
RefseqXP_024021770.11e-111GATA transcription factor 1
TrEMBLW9R3B30.0W9R3B3_9ROSA; GATA transcription factor 1
STRINGXP_010097024.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-41GATA transcription factor 1