PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096412.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 392aa    MW: 43458.1 Da    PI: 8.7332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096412.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-175094147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg++T+eEd+l+++++ +lG++ W++Ia++++ +Rt++++k++w+++
   XP_010096412.1 50 RGNFTQEEDDLIINLHSLLGNK-WSLIASRLP-RRTDNEIKNYWNTH 94
                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-113056IPR009057Homeodomain-like
PROSITE profilePS500904.0543144IPR017877Myb-like domain
SuperFamilySSF466895.13E-2231103IPR009057Homeodomain-like
PROSITE profilePS5129428.0244599IPR017930Myb domain
SMARTSM007172.5E-174997IPR001005SANT/Myb domain
PfamPF002493.1E-165094IPR001005SANT/Myb domain
CDDcd001678.28E-135295No hitNo description
Gene3DG3DSA:1.10.10.604.5E-235796IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSVSSTTSNS TAKAAGDLFP KQLLARAGLL RCGKSCRLRW INYLRPDLKR GNFTQEEDDL  60
IINLHSLLGN KWSLIASRLP RRTDNEIKNY WNTHIKRKLY NRGIDPQTHR PLVVNNTTSP  120
TTAPSCSNKT TIATNNSTSS SSSSTNSNID HHTENKKTPC CSASNIIMMR GSQFEVLTTI  180
SSSSDQQLKQ LKIHDHDQVN ISTTPAGTST HDHRQTSSED SNSSAATVVG LTTDQVMFSQ  240
LNLDLSIGLI TTTTTTHDRH SAAADEISLA DNNNNVTKYS KPQQKPQKRH DFTTTTAYNY  300
HHQFNLQHNI DGDYNVIANY VTPAPISSSC SSGGTGTASA NSHYHHHYHH RDNNVCLCCH  360
LGFQKQPCTC TAAATTTLTT TPEINFFRYF RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-21239932108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096412.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9R1W90.0W9R1W9_9ROSA; Transcription repressor
STRINGXP_010096412.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-53myb domain protein 4