PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095372.1
Common NameDREB4E
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 267aa    MW: 29135.4 Da    PI: 4.8579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095372.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-1863113155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +grWv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  XP_010095372.1  63 PVYRGVRMRT-WGRWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALTIKG 113
                     68*****998.**********854...59*********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1263113IPR001471AP2/ERF domain
PROSITE profilePS5103223.06464121IPR001471AP2/ERF domain
SMARTSM003801.9E-3564127IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2164122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3164122IPR001471AP2/ERF domain
PRINTSPR003679.0E-106576IPR001471AP2/ERF domain
CDDcd000185.82E-3165123No hitNo description
PRINTSPR003679.0E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLPTESPLIW EPESTANSSS SSSPKTAPYK DAGKSRSPDP DQKRVKRPRD NSNNGSSINS  60
EHPVYRGVRM RTWGRWVSEI REPRKKNRIW LGTFSTPEMA ARAHDVAALT IKGASAILNF  120
PELAGSLPRP DSTSPRDVQA AAAKAASMDL PLPVPVPIPS PTTPSSSSSS SSSMAATSSS  180
YDVSSSPEEL SEIVKLPSLG TSYESPESGS EFVFVDSVDC GTWLYPPPAW YNEGFEDYYY  240
QIQMAMPLSE PECAIPSSVF EPFLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2053122373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095372.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783820.0KF678382.1 Morus notabilis dehydration responsive element binding transcription factor (DREB4E) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095372.10.0ethylene-responsive transcription factor TINY
SwissprotQ9LYD34e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLW6FG920.0W6FG92_9ROSA; Dehydration responsive element binding transcription factor
STRINGXP_010095372.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]