PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010094455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 611aa MW: 69637 Da PI: 4.7348 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 300 | 320 | 2 | 22 |
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ XP_010094455.1 300 YCVVCGKKFKSEKQWKNHEQS 320 5*****************876 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00061 | 583 | 600 | 3 | 20 |
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C++Cg+ F +k L++H+ XP_010094455.1 583 CEKCGEEFESKNKLHKHL 600 *****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 3.3E-24 | 5 | 80 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 4.32E-23 | 6 | 86 | IPR001623 | DnaJ domain |
SMART | SM00271 | 4.0E-24 | 8 | 70 | IPR001623 | DnaJ domain |
CDD | cd06257 | 1.52E-18 | 9 | 67 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 19.992 | 9 | 78 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 6.1E-22 | 10 | 75 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 9.7E-16 | 11 | 29 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 9.7E-16 | 29 | 44 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 9.7E-16 | 50 | 70 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 55 | 74 | IPR018253 | DnaJ domain, conserved site |
SuperFamily | SSF57667 | 6.82E-13 | 291 | 337 | No hit | No description |
SMART | SM00451 | 1.5E-5 | 296 | 330 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12171 | 2.7E-10 | 299 | 324 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.43 | 299 | 323 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 301 | 323 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.245 | 581 | 610 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.2 | 581 | 605 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 583 | 605 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 611 aa Download sequence Send to blast |
MAAASGRRCH YEVLGLRRES TADEIRSAYK KLALQLHPDK LVQSGLSQSE ATARFQELSQ 60 AYEVLSDPKE RAWYDSHRSQ ILFADPNSAD SVPDSVIPNL FSFFSNSVFS GYSDTGKGFY 120 KVYSDVFSKI YANELSFASK LGLGLDAVRE APAMGNLESP YTQVTAFYGY WLGFSTVMDF 180 CWVDQYDAMA GVNRKSRRVM EEENKKLRKK ARREYNETVR GLAEFVKKRD KRVIDMAVKK 240 NLGMEKRREE ERERKNKMER ERLERAMAYE EPEWSRIGEE EEAEEEENVV EEVEEKKELY 300 CVVCGKKFKS EKQWKNHEQS KKHREKVAEF RESVGDEEFE DDLEGEDGDE KDGEVEELEE 360 KMRDGFRIGE EEEVELSNGD DDEFGEVGAA NGVDEDGEKV GFDAEDDEDG ENADNGDDDT 420 VDDEIGVLEA MLGRRRNRKK NGSLPETNGT LNSINVHVEN DDNDDDDDDF MDYNKRKTTR 480 RNRRARKERS GKNGEEAGVS RSEKSKESNG DENLHHQEES SSRSVAENES NGKEDDLLAD 540 NKKSSNQHVD KKGKAKNDTN AKSKNSSRGK KAKATSKNSS NACEKCGEEF ESKNKLHKHL 600 TDTGHATLKC R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 212 | KKLRKKARR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010094455.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094455.1 | 0.0 | DNAJ protein JJJ1 homolog | ||||
Swissprot | Q9C911 | 0.0 | JJJ1_ARATH; DNAJ protein JJJ1 homolog | ||||
TrEMBL | W9QWL2 | 0.0 | W9QWL2_9ROSA; DnaJ homolog subfamily C member 21 | ||||
STRING | XP_010094455.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6551 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 1e-143 | DNAJ heat shock N-terminal domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21384698 |