PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010094448.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Protein Properties

Length: 328aa MW: 37440.5 Da PI: 10.0237

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010094448.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.4	1.1e-17	143	231	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v + +l lp +f+++h k +++++ le+e+g++++ +i ++++ l++GW+ F+ +++L++gD +vF+l++ +f ++ XP_010094448.1 143 FVKSMVRSHVYSCFWLGLPLRFCKDHLPK--KTVDMELENEDGKVYDAVYIGERSG----LSGGWRAFALEHKLDDGDALVFELVEPCRF--KIY 229 89********************99533..6789***********555555....9********************9987777..555 PP EE CS B3 96 vf 97 ++ XP_010094448.1 230 IV 231 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-20	135	232	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-24	138	235	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.89E-27	141	232	No hit	No description
SMART	SM01019	4.5E-26	143	234	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.393	143	234	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-16	143	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MLTPKSNDNA NTYEEARKQR LEENKKRFED LGIASVSKGL TELTNSEKKS QQGQLPKPRS 60 KTAFAVEPRR STRVRNPVQT YRYDVDMELP FSRKKSRSKS SSWASYLARP IEEVKLASYE 120 ERTYAFKAAE ELQKNLKSDN PCFVKSMVRS HVYSCFWLGL PLRFCKDHLP KKTVDMELEN 180 EDGKVYDAVY IGERSGLSGG WRAFALEHKL DDGDALVFEL VEPCRFKIYI VRVSMLSSQE 240 CNTNMNDKEN NTGAKKKPKR TMKSGDALAK NDGLVNSDEV KQDASLVSKG VEKDRGDSKT 300 SETCRKTEPK CLPRRSTRKP TPKRAQQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	99	KKSRSKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010094448.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010094448.1	0.0	putative B3 domain-containing protein At5g58280
Refseq	XP_024020034.1	0.0	putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	5e-76	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	W9QW98	0.0	W9QW98_9ROSA; Putative B3 domain-containing protein
STRING	XP_010094448.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12433	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	5e-75	B3 family protein

Link Out ? help Back to Top
Entrez Gene	21401779

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]