PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094372.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 494aa    MW: 54516 Da    PI: 8.9518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094372.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.9e-19127217199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l++s+v +  ++ lp  f+++h  +  +++t+tlede+g+++ +k+i  k++    l++GW++F+ a++L egD++vF+l++ ++f  +v 
  XP_010094372.1 127 FVKSLVRSHVASCFWMGLPGLFCKSHLPD--KDTTVTLEDENGKQYGIKYIAYKTG----LSAGWRQFAVAHKLLEGDVLVFQLVEPTKF--KVY 213
                     89************************534..5679***************666665....9**********************9876666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_010094372.1 214 IIRA 217
                     9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-21119218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-24120218IPR015300DNA-binding pseudobarrel domain
CDDcd100178.00E-27125216No hitNo description
PfamPF023621.5E-16127217IPR003340B3 DNA binding domain
SMARTSM010194.4E-23127218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.62127218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEIAKTAEDD DVITLAQLSK SPPKKARPIK PSSSTSSPVF FSLSVSIYAK TKNSKEREKS  60
ISTTSVKKRN SDVQIKFVVS GRSGSPMSCK PSMVATDGSC SSGQAKSSAV IRAQEVRSNL  120
EPEFPSFVKS LVRSHVASCF WMGLPGLFCK SHLPDKDTTV TLEDENGKQY GIKYIAYKTG  180
LSAGWRQFAV AHKLLEGDVL VFQLVEPTKF KVYIIRANDL TEVDGALGLL NLDSYTKHND  240
SDKDNAQTEA VASSNSRKKR PKSLPLSVVQ KKKRKPGLPR SVPKPAEQSE NNSEEGASEV  300
LEGSKSSGAA IQFQDVKTFE NFSIQVDGLL LDSEVPEDIR KTYYKLCCSQ NAFLHDDVIK  360
GMNKKLIVGT ITETVHIANA IKVCTLTTSR DDFSAWDKSL KAFELLGMNV GFLRARLSQL  420
AGLAYKSEVS IDTRRYVESR AERARAETGM KDIETKLAEL KDAFDKFDAT VQCLGSQAES  480
YEHKFQQEVI ADLW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257274KKRPKSLPLSVVQKKKRK
2270275KKKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094372.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094372.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLW9R6M50.0W9R6M5_9ROSA; B3 domain-containing protein
STRINGXP_010094372.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-39B3 family protein