PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010093938.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NAC

Protein Properties

Length: 265aa MW: 30533 Da PI: 7.888

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010093938.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.9	2.6e-46	17	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratksgyWkatgkdke 91 lppGfrF+Ptdeelv +yL++k+ + + + +++i+e++++k++PwdLp+ + e+e y+Fs+++ ky++g+ ++nr+t+sgyWk+tg+dk+ XP_010093938.1 17 LPPGFRFQPTDEELVFQYLRRKIFSCPmpsSSDHHIIPEINVCKYDPWDLPS-GDIVEQERYYFSNKEAKYRNGSnKANRKTNSGYWKSTGSDKK 110 79********************999543233347***********3.34467899*******97637899*********** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ ++ vg++ktLvfy+g+ p+g++tdW+mhey+l XP_010093938.1 111 IVSStMKHIVGTRKTLVFYRGKPPHGSRTDWFMHEYSL 148 9866778***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-49	7	184	IPR003441	NAC domain
PROSITE profile	PS51005	50.582	17	184	IPR003441	NAC domain
Pfam	PF02365	7.0E-25	18	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDKYFNFVRN NNGVIKLPPG FRFQPTDEEL VFQYLRRKIF SCPMPSSSDH HIIPEINVCK 60 YDPWDLPSGD IVEQERYYFS NKEAKYRNGS NKANRKTNSG YWKSTGSDKK IVSSTMKHIV 120 GTRKTLVFYR GKPPHGSRTD WFMHEYSLNI VDVEDDQTNS GNNFPQISQS QTENNWVLCR 180 IFLKERSSSS TNNNINNIDE IQQNWKDNKM RRSVGINDCQ PYKLYDLVMG CEIDTSPMLP 240 LSSSSSSNSS YVTEDHEVSS SGGMP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-40	15	188	18	172	NAC domain-containing protein 19
3swm_B	6e-40	15	188	18	172	NAC domain-containing protein 19
3swm_C	6e-40	15	188	18	172	NAC domain-containing protein 19
3swm_D	6e-40	15	188	18	172	NAC domain-containing protein 19
3swp_A	6e-40	15	188	18	172	NAC domain-containing protein 19
3swp_B	6e-40	15	188	18	172	NAC domain-containing protein 19
3swp_C	6e-40	15	188	18	172	NAC domain-containing protein 19
3swp_D	6e-40	15	188	18	172	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010093938.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093938.1	0.0	NAC domain-containing protein 83
Swissprot	Q9FY93	2e-65	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	W9R2Y4	0.0	W9R2Y4_9ROSA; NAC domain-containing protein 29
STRING	XP_010093938.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-66	NAC domain containing protein 83

Link Out ? help Back to Top
Entrez Gene	21392182

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]