PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093716.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 422aa    MW: 47790.8 Da    PI: 9.211
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093716.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-091491861954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+++++  LAk++gLt +qV++WF N R +
  XP_010093716.1 149 FEHflHPYPKTADKVILAKQTGLTRSQVSNWFINARVR 186
                     564459******************************88 PP
2BELL91.49.2e-3030841872
            BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                    +V++rY+qy++q+q+vis Fe++ag gsak+Yt+lAlk+iS++FrcLkdai++qi
  XP_010093716.1 30 KVEQRYRQYHHQMQVVISTFEEAAGFGSAKSYTALALKTISKQFRCLKDAISSQI 84
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-6182IPR006563POX domain
PfamPF075263.6E-243081IPR006563POX domain
PROSITE profilePS5007111.855127190IPR001356Homeobox domain
SMARTSM003892.6E-9130194IPR001356Homeobox domain
CDDcd000861.79E-11130191No hitNo description
SuperFamilySSF466893.29E-17131197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-28133197IPR009057Homeodomain-like
PfamPF059201.3E-17147186IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSYTIFLHVT HTLIYAYVSS NFFFSFVIIK VEQRYRQYHH QMQVVISTFE EAAGFGSAKS  60
YTALALKTIS KQFRCLKDAI SSQIKAASKS LGEEECLGVK IEGSRLRYVD HHLRQQRALQ  120
QLGMIQHNAW RPQRGLPERA VSVLRAWLFE HFLHPYPKTA DKVILAKQTG LTRSQVSNWF  180
INARVRLWKP MVEEMYMEET KEQERNNGST SQSGQTKKTE PNEEPSSANI TSTSQVHDMM  240
NAFQSSKPDQ NFATEFPNSP LSTSPMPGSF HFGTTEIQAI SPKKQRSTTT PTTSEVLNSP  300
SSILSMDNMD MCRDQMNHQR QRKYNTVGFG AYPVGDLGRF HLSADHHHHQ LAPRFHGNGV  360
SLTLGLPHCE NHSLSNQNII DPSGTRLDNS IGTGSESTGN YDNMDMQSRK RFVAQLLPDF  420
VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15136194563Homeobox protein Meis2
3k2a_B2e-15136194563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089795.10.0BEL1-like homeodomain protein 1
RefseqXP_024017018.10.0BEL1-like homeodomain protein 1
RefseqXP_024017019.10.0BEL1-like homeodomain protein 1
RefseqXP_024017020.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-111BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLW9SP110.0W9SP11_9ROSA; BEL1-like homeodomain protein 1
STRINGXP_010093716.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.37e-96BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]