PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010093055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 370aa MW: 42694.8 Da PI: 7.3686 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.6 | 2.9e-50 | 33 | 165 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yL++kv++k++++ + ik +diyk++PwdLpk +++a++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s+ XP_010093055.1 33 PGFRFHPTDEELVGFYLRRKVDKKPITI-QLIKPIDIYKYDPWDLPKgtSCSAGDKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPVHSH 126 9***************************.89***************545667799***************************************9 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +glkktLv+y+g+a kg+ktdW+mhe+rl XP_010093055.1 127 ggdygqKNQCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 165 8888766666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-52 | 30 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.059 | 31 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-26 | 33 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MIMDSPSNIG GGTILDEDHD HHGHDDQVEV PLPGFRFHPT DEELVGFYLR RKVDKKPITI 60 QLIKPIDIYK YDPWDLPKGT SCSAGDKEWY FFCKRGRKYK NSIRPNRVTG SGFWKATGID 120 KPVHSHGGDY GQKNQCIGLK KTLVYYRGSA GKGTKTDWMM HEFRLPTIND NYHNITNIHP 180 ACNTPKADPQ EAEIWTLCRI FKRNMSYRRY TPDWRELSTK RHHPMDAIIS SKKCSNLDHS 240 DNNNNITTNR EANHNYIDFS TPIRMNYHED HQEKKPVINH TMIMNNNGIS HHDRTSNQLL 300 HAGQLNSNMV PHNYNNHNII NVNPSINPFS SCFSTCPDEI SDDQLFTRMT NTTWDELSAV 360 VELALDPAFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 27 | 209 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 27 | 209 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 27 | 209 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 27 | 209 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-46 | 27 | 209 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 27 | 209 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010093055.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093055.1 | 0.0 | transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
Swissprot | Q9SK55 | 2e-79 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | W9QSI2 | 0.0 | W9QSI2_9ROSA; NAC domain-containing protein 42 | ||||
STRING | XP_010093055.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-79 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Entrez Gene | 21399320 |