PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010091926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MYB | ||||||||
Protein Properties | Length: 392aa MW: 43635.3 Da PI: 5.8928 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l+ v ++G g+W++++ + g++R++k+c++rw +yl XP_010091926.1 14 RGLWTAEEDARLLAHVSKHGFGNWTSVPMKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.6e-15 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T++E+e ++++++ G++ W++Ia+ ++ gRt++++k++w++ XP_010091926.1 69 DFTPQEEEHIINLHQAIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110 69******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.404 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.64E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.195 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-13 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-9 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGRPPCCDKS NVKRGLWTAE EDARLLAHVS KHGFGNWTSV PMKAGLNRCG KSCRLRWTNY 60 LRPDLNHNDF TPQEEEHIIN LHQAIGSRWS LIAKQLPGRT DNDVKNYWNT KLRKKLSKMG 120 IDPITHKPIS QILSEYGNIS GLVNSGRLHI ASRNTDNVFV PKSEPSSIIT GFLPPTNMIT 180 RPAIEQVPDY DSFSSYNPSL DFLSKSQVIN HDIVQPHFFN EVTSSCSSSS SSSHVSDLIS 240 SPQSLSCQQS QAQIFTHSSS SSSSSSLNWS EFFLKLEEET QEGEQEGDLQ GLVSSTNAVI 300 LSQSETPAQK FRSDQYSANR TVDEELGSHS MSDFESTIFG SQVSNKTENS SADSFLDTLL 360 DRDSKLTAAF PELLDGSFGY YCAYLDDRHF PA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010091926.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC408325 | 0.0 | KC408325.1 Morus indica microsatellite MSCP180-C sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010091926.1 | 0.0 | transcription factor MYB35 | ||||
TrEMBL | W9QPV9 | 0.0 | W9QPV9_9ROSA; Transcription repressor | ||||
STRING | XP_010091926.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 2e-75 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21393781 |