PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010091496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24954.4 Da PI: 7.1654 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.2e-09 | 32 | 79 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 ++E++RR++++ +++L +llP++ +sk + + + +A+++IksL+ XP_010091496.1 32 RIIEKNRRNQMKVLYSKLNSLLPPQ---NSKEvQTLPDQVDEAINHIKSLE 79 68**********************9...88888****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-10 | 25 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.02 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.05E-4 | 28 | 82 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.8E-9 | 31 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-5 | 32 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0011 | 32 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MGLFVVEDLG ANKQVQAMDQ GSQSSATKIE RRIIEKNRRN QMKVLYSKLN SLLPPQNSKE 60 VQTLPDQVDE AINHIKSLEA RLKKYKEKKK SLLGRKRSYT CANSLESVGS QRSPQIEIHE 120 IGSVIEVVLI TGLDNQFIFY ELIRILHEER ADVVDAKYSV SRDSIFHVVH AEIADSIFGA 180 TKISERLKRF VSGSSSDIEL QPDQWWDDFE IHPELLKF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010091496.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010091496.1 | 1e-159 | transcription factor bHLH162 | ||||
TrEMBL | W9RA84 | 1e-158 | W9RA84_9ROSA; Uncharacterized protein | ||||
STRING | XP_010091496.1 | 1e-159 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-27 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21393633 |