PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010091366.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 525aa    MW: 57108.1 Da    PI: 5.387
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010091366.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.61.8e-951235171374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn............sseelaa 80 
                     lv+lL+++Aea+ +++++  la+ +L rl+el+sp++ ++++Rlaa+f  AL++ l    ++  ++ +  +    +            + +++aa
  XP_010091366.1 123 LVHLLMAAAEALGEENKSrdLARVILVRLKELVSPTDgTNIERLAAHFSDALHSLLECAATGAHAKHHHHN----HfignsgdnhhhhQNDVVAA 213
                     68**********998887679***********9987769****************9874433322221111....111112333445699999** PP

            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg.....skeeleetgerLakf 168
                     ++l++++sP++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++ +++     s  +++etg+rLa f
  XP_010091366.1 214 FQLLQDMSPYVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPspHLRITALSRGAASaaarrSIGTIQETGRRLAAF 308
                     ********************************************************776555********98777888889999*********** PP

            GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.......sFle 255
                     A+++g+pf+f+    ++ e++++++ ++ +gEal+Vn++l+l ++  +s ++     ++L+  k+l+P+++ +ve+e+ +   +       +F++
  XP_010091366.1 309 AASIGLPFSFHQCRLDSDESFRPSAVKLVKGEALIVNCMLNLPHFTYRSPESVA---SFLSGAKTLNPRLIALVEEESPLpA-TtpegsggKFVA 399
                     ************9999****************************9977766666...9*******************76632.22455666**** PP

            GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                     rf++ l+ ysa++dslea++p + ++r+ vEr++lg++i   +    ++   r e+ ++W e+l +aG +++p+s  + +qaklll  ++ dgyr
  XP_010091366.1 400 RFMDLLYQYSAVYDSLEAGFPMHGRARALVERVFLGPRIAGSLGRIYRA---RGEESGSWGEWLAAAGCRAAPVSFANICQAKLLLGLFN-DGYR 490
                     *******************************************999998...899999********************************.**** PP

            GRAS 351 ve...eesgslvlgWkdrpLvsvSaWr 374
                     ve   ++ + lvlgWk+r+L+s+S W+
  XP_010091366.1 491 VEevaSNTNRLVLGWKSRRLLSASLWT 517
                     **55556999****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.01997495IPR005202Transcription factor GRAS
PfamPF035146.1E-93123517IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.801.8E-4156244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MTDHLMGSAV AVAMEMMMDD DFELDLSSYS TTTTTTNTMD QDDRGCAWNA WSPVLDWTAL  60
TGGHDDFHDL IESMMDDDDN DDDGGDLLSN TSNSTPSTGT EVSCDEVVAG GDVSDDANKG  120
VRLVHLLMAA AEALGEENKS RDLARVILVR LKELVSPTDG TNIERLAAHF SDALHSLLEC  180
AATGAHAKHH HHNHFIGNSG DNHHHHQNDV VAAFQLLQDM SPYVKFGHFT ANQAILEAVA  240
HDRRVHIVDY DIMEGIQWAS LMQALVSRKD GPPSPHLRIT ALSRGAASAA ARRSIGTIQE  300
TGRRLAAFAA SIGLPFSFHQ CRLDSDESFR PSAVKLVKGE ALIVNCMLNL PHFTYRSPES  360
VASFLSGAKT LNPRLIALVE EESPLPATTP EGSGGKFVAR FMDLLYQYSA VYDSLEAGFP  420
MHGRARALVE RVFLGPRIAG SLGRIYRARG EESGSWGEWL AAAGCRAAPV SFANICQAKL  480
LLGLFNDGYR VEEVASNTNR LVLGWKSRRL LSASLWTSSF SVSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4813151727379Protein SCARECROW
5b3h_A1e-4813151726378Protein SCARECROW
5b3h_D1e-4813151726378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010091366.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091366.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLW9QVR70.0W9QVR7_9ROSA; Uncharacterized protein
STRINGXP_010091366.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-140GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]