PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010091043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LBD | ||||||||
Protein Properties | Length: 306aa MW: 34393.3 Da PI: 5.6416 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.2e-39 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C+++C lapyfp +qpk f+n+hklFG++n+lk+l++l++e++ +am s++yeA+ r rdP +G++g i +l+ q+ +l++el+ XP_010091043.1 10 ACAACKYQRRRCTAECLLAPYFPPDQPKIFQNAHKLFGVKNILKILEKLDPEQKAAAMWSIIYEANERDRDPAHGCLGKICQLRYQIWHLEQELH 104 7********************************************************************************************** PP DUF260 96 llkee 100 +++++ XP_010091043.1 105 SVHTH 109 99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.378 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-37 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MTLKGGTSQA CAACKYQRRR CTAECLLAPY FPPDQPKIFQ NAHKLFGVKN ILKILEKLDP 60 EQKAAAMWSI IYEANERDRD PAHGCLGKIC QLRYQIWHLE QELHSVHTHL EICRQHHHQQ 120 QQISSNMPHH DQHVTSQLER GMAPPSNALP LLSDHTTAQA YNAMPGLAVT QHEAYSNNTN 180 DAYDAVVFMD SKDNNNVGNP LWAQYPYSTT NNSENNNNSS MAIQSQMVVS QPLDVQQQVV 240 QDCDEMPFFM DDRQSFADSK EAYESSSEES VLKDTTQSLD PVADIELKNA AACFSLTSVT 300 AATDHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-31 | 6 | 128 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-31 | 6 | 128 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010091043.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010091043.1 | 0.0 | LOB domain-containing protein 27 | ||||
TrEMBL | W9QM94 | 0.0 | W9QM94_9ROSA; Uncharacterized protein | ||||
STRING | XP_010091043.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-50 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Entrez Gene | 21389838 |