PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010090439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 612aa MW: 68034.7 Da PI: 4.4086 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.1 | 3e-52 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+kv g++l++ + i+ vd+yk+ePwdLp k k+k+++ ewyfFs dkky +++r+nrat +gyWk+tgkd+++ XP_010090439.1 9 LAPGFRFHPTDEELVRYYLKRKVCGRPLRI-DPISVVDVYKSEPWDLPdKsKLKTRDLEWYFFSALDKKYGNSSRTNRATVEGYWKTTGKDRPIR 102 579***************************.89**************95347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv+++grapkg +t+Wvmheyrl XP_010090439.1 103 Q-SSRTVGMKKTLVYHSGRAPKGARTNWVMHEYRL 136 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.514 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MGRDSSTSLA PGFRFHPTDE ELVRYYLKRK VCGRPLRIDP ISVVDVYKSE PWDLPDKSKL 60 KTRDLEWYFF SALDKKYGNS SRTNRATVEG YWKTTGKDRP IRQSSRTVGM KKTLVYHSGR 120 APKGARTNWV MHEYRLADEE LEKAGIAQDA FVLCRIFQKS GTGPKNGEQY GAPFIEEEWE 180 DDEIVAMVPG EETPTGEVEV DDSAFVDVNE LDQELFIVTI VHRRDGKHLA TVFETNALFS 240 QNFGTGIPLE VDAVPFTFYH GDTSNNVEHA GNFADPDTSE VAPLPLNYYH GETSNYVEHS 300 GDFSEGDLKP MIGMENSEIG VEQPFFRLPE QHEMHAKPVK DEYCVQPSDN VDPADVNYAF 360 GEQFLNATNT PPFGEGLYLE TNDLSKPVEE DPGDFGLLDE YLNFFDVEDD SQLLAFDSSQ 420 IMGIENSLTQ EEPPLQKLVT GEAEASPTGT QQPAEAHDNN EASTSSQRAE VTKSESDFKY 480 PFMKQASQML GSIPAPPAFA AEFPTKDAAL RLNSVGTSSG SVHVTAGMIR IQHLNLDGNG 540 MDWSFGKSGD VNLLLSYSLP QAAFDSATVV PMAGILSGKA GSVVSKGWFF FMFIWVLIIS 600 VSFKVGNYIY TR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-48 | 4 | 159 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010090439.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR060016 | 0.0 | KR060016.1 Morus alba NAC domain containing transcription factor 78-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024017429.1 | 0.0 | NAC domain-containing protein 53 | ||||
TrEMBL | W9QKP7 | 0.0 | W9QKP7_9ROSA; NAC domain-containing protein 78 | ||||
STRING | XP_010090439.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5347 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-157 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21391388 |