PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090039.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 335aa    MW: 37327.8 Da    PI: 9.9014
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090039.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.7e-19200233134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_010090039.1 200 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 233
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.532194230IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-12194234No hitNo description
SMARTSM004013.6E-19194245IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15198233IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.17E-14199231No hitNo description
PROSITE patternPS003440200225IPR000679Zinc finger, GATA-type
PfamPF003205.4E-17200233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDPPYHNSPP STFLDLNIED HGHHHLFTLN HDQTSSSLSL SSPNFMNIPP QDQGQFYYRE  60
PQTIQVQEAD HHHKLVSSGG SSDIHPPRVA ESESDHHQND LKLSIWKSST EDSNYDHDKS  120
SHVSDNNAGY SAKWMPSKMR MMRKMIVNPD QTNIDHHTPL NFTHKFDQVM KRKHPASPLG  180
TDHSSTSSSN NNNNNTIRVC ADCNTTKTPL WRSGPRGPKS LCNACGIRQR KARRAMAAAA  240
AAANGTILAT DATTMKSSTK VQRKEKKPKN GNGVVPQFKK RCKLTASPSR GRKKICFEDL  300
AISISKNSAF QRVFPQDEKD AAILLMALSY GLVHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3803183e-31FQ380318.1 Vitis vinifera clone SS0ACG71YI23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090039.10.0GATA transcription factor 21
TrEMBLW9QJX10.0W9QJX1_9ROSA; Putative GATA transcription factor 22
STRINGXP_010090039.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-29cytokinin-responsive gata factor 1