PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089922.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 404aa    MW: 46415.6 Da    PI: 7.0735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089922.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16291061398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++l +pkkf e+ +++      +tl+ + g  W+v l  +  +++++++ GW+eFv+++ L e+D +vF+++g+s f   v +f+
  XP_010089922.1  29 HQQLAIPKKFSEKKKLP----DSVTLKGPGGGMWKVGL--TTVGNSMFFKHGWQEFVNDHFLVENDLLVFRYNGESLF--EVLIFD 106
                     467********888766....36***************..88888899************************998888..777776 PP
2B339.78.8e-13272366398
                     EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                      v++p +v k+  + lp + ++++ +  +++  +l l     r+W+ +++y++ ++   lt+GWk+F+ +n+L+  D++vF+      ++f l v
  XP_010089922.1 272 VVMKPTYVYKRFYVFLPSDWVAKYiS-LENQ--DLFL-RFGEREWRTRFNYNQVRSCAGLTSGWKHFAVDNNLEHFDVCVFEPGsPVnNSFCLDV 362
                     57999*******************53.4334..5664.4588*******9977777789***********************5422247777778 PP

                     EEE- CS
              B3  95 kvfr 98 
                     k+fr
  XP_010089922.1 363 KIFR 366
                     8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1916106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.66217108IPR003340B3 DNA binding domain
CDDcd100171.23E-1719106No hitNo description
Gene3DG3DSA:2.40.330.102.5E-1919106IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-1620108IPR003340B3 DNA binding domain
PfamPF023621.3E-1329106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-15263366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13264366IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-5270368IPR003340B3 DNA binding domain
PROSITE profilePS5086310.447270368IPR003340B3 DNA binding domain
PfamPF023621.1E-10272366IPR003340B3 DNA binding domain
CDDcd100171.29E-13273366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEGSKWEEYI YWAHFKHIHF SQFLLDDFHQ QLAIPKKFSE KKKLPDSVTL KGPGGGMWKV  60
GLTTVGNSMF FKHGWQEFVN DHFLVENDLL VFRYNGESLF EVLIFDGHSL CEKEVTYFVK  120
KHENSKTDNG GRLTKRKLRE TSCDEINNAC SENVVCASPE KSRDDDIIVL PSEEQVITLS  180
TNNKGRKKLT AVRPLRSCRS ATINESSPCD VQVQVQVQPV TKSDAEHTPT RRRGYSMQYV  240
SNRRPITEDE KDRAMKLAEA EISESNNEGL LVVMKPTYVY KRFYVFLPSD WVAKYISLEN  300
QDLFLRFGER EWRTRFNYNQ VRSCAGLTSG WKHFAVDNNL EHFDVCVFEP GSPVNNSFCL  360
DVKIFRVVPE VALLTPVGSP TSGKRGRKSS KIVEIENDEL LEAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1424136722142B3 domain-containing transcription factor VRN1
4i1k_B3e-1424136722142B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089922.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089922.10.0B3 domain-containing protein REM16
RefseqXP_024017087.10.0B3 domain-containing protein REM16
TrEMBLW9QUC60.0W9QUC6_9ROSA; B3 domain-containing protein REM16
STRINGXP_010089922.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-59B3 family protein