PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089843.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 351aa    MW: 39857.8 Da    PI: 8.5862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089843.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05187206120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+k+F+r  n++ H+
  XP_010089843.1 187 FSCSICSKTFNRYNNMQMHM 206
                     89*****************9 PP
2zf-C2H216.62.2e-05271293123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgk+F  k + ++H +++
  XP_010089843.1 271 FSCRKCGKTFAVKGDWRTHEKNC 293
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-5178210No hitNo description
SMARTSM003550.13187209IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783187214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5187206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SMARTSM00355190234266IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.52E-6256291No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5258291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035532271291IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLWNHHFQE NNLCFQAPTF IEWLKPNSPY NSSNNSSSSS SSSNSSSSSS LNSNITHQDL  60
DLQKSSTSTT QCLPLLSRFT ETKPLKLEEF GVKRESTFGI KEEKNIEKVT LSLHIGLPNT  120
TTTTTTRTVD SGDHDDDEKK VVVDLIKEDQ EQKQPMRKSF QYGCSFNMES RFWIPTPAQI  180
LVGPMQFSCS ICSKTFNRYN NMQMHMWGHG SEYRKGPESL KGTQPAAMLR LPCYCCAQGC  240
KNNINHPRAK PLKDFRTLQT HYKRKHGAKP FSCRKCGKTF AVKGDWRTHE KNCGKLWYCT  300
CGSDFKHKRS LKDHIRSFGK GHSPHPSLDG FDHDEKECVT AGSEDEELVH A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089843.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-124ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLW9QJ780.0W9QJ78_9ROSA; Protein TRANSPARENT TESTA 1
STRINGXP_010089843.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-118WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]