PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010089601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14455.7 Da PI: 9.4867 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.4 | 9.4e-12 | 9 | 98 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 lt sdv ++ l++p++ e + +++ + +++l d g We+++ +r+k++ ++ ++GW +Fv+ +gL++gD+v+++ +++ XP_010089601.1 9 LTESDVKSK--LSVPRDWWEIIrplfgeELDRRHEIELWAVDGVGMFWEFRCAVRQKGRYkkpVLQSDGWLKFVNYKGLEVGDIVILETVEN 98 566677665..999***996669999998888899999999999********8744444456567779********************6643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.19E-13 | 7 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-13 | 7 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-9 | 9 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.92E-9 | 9 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MAAGLPKWLT ESDVKSKLSV PRDWWEIIRP LFGEELDRRH EIELWAVDGV GMFWEFRCAV 60 RQKGRYKKPV LQSDGWLKFV NYKGLEVGDI VILETVENRF RGTRFLLRAL KYHAGGHYWF 120 DV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010089601.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9QIC6 | 6e-84 | W9QIC6_9ROSA; Uncharacterized protein | ||||
STRING | XP_010089601.1 | 1e-84 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 4e-07 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Entrez Gene | 21403861 |