PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089593.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 120aa    MW: 14177.4 Da    PI: 9.7055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089593.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.6e-12797387
                    EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87
                    k lt sdv+++  l++pk+  + +     +++ ++++++   d  g  We+++ + +k++     ++ ++GW +Fv+ ++L++gD+v+++ +++
  XP_010089593.1  7 KRLTESDVNSR--LSVPKEWWDVIrplfgEEDRRREIEVWAVDGVGMFWEFRCAVrQKGP-YkkpVLQSEGWLKFVNYKRLRAGDVVILETVEN 97
                    67888888865..9******9888***9977788999999999999*******7742222.236577779********************7654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.09E-116110No hitNo description
SuperFamilySSF1019365.49E-15698IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-9797IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15798IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAGLPIKRLT ESDVNSRLSV PKEWWDVIRP LFGEEDRRRE IEVWAVDGVG MFWEFRCAVR  60
QKGPYKKPVL QSEGWLKFVN YKRLRAGDVV ILETVENQFR GTRFLLRALK CHADGHWFDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9QQW21e-82W9QQW2_9ROSA; Uncharacterized protein
STRINGXP_010089593.12e-83(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.14e-08auxin response factor 17