PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010089317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 124aa MW: 14362.9 Da PI: 6.2607 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.6 | 6.1e-08 | 98 | 123 | 2 | 30 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkr 30 +++GVr+++ +g+++AeIrd ++ng kr XP_010089317.1 98 HFRGVRRRP-WGKYAAEIRDRKKNG--KR 123 58*******.**********77777..44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-8 | 98 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.903 | 98 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-5 | 98 | 124 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MSRVMTCSES DFALLHTIRE QLLREDQFDN SLDSSDSPMY CRSSSFSNIF LAESWSAELP 60 FKENDTDDMS VTPARGDDTP TDTARDSHVP PQMERNMHFR GVRRRPWGKY AAEIRDRKKN 120 GKRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010089317.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089318.1 | 2e-53 | ethylene-responsive transcription factor 13 | ||||
TrEMBL | W9R3X2 | 2e-87 | W9R3X2_9ROSA; Ethylene-responsive transcription factor 13 | ||||
STRING | XP_010089317.1 | 3e-88 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-22 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Entrez Gene | 21404688 |