PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089303.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 333aa    MW: 36080 Da    PI: 7.0115
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089303.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18167221256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010089303.1 167 RKKLRLTKDQSLILEETFKEHNTLNPKQKLALAKELNLRPRQVEVWFQNRRARTK 221
                     788899***********************************************98 PP
2HD-ZIP_I/II1261.7e-40167256191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q+ +LEe+F+e+++L+p++K +la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_010089303.1 167 RKKLRLTKDQSLILEETFKEHNTLNPKQKLALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 256
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.9E-301131IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.1E-18146224IPR009057Homeodomain-like
SuperFamilySSF466893.59E-19152224IPR009057Homeodomain-like
PROSITE profilePS5007117.265163223IPR001356Homeobox domain
SMARTSM003891.2E-15165227IPR001356Homeobox domain
CDDcd000862.14E-14167224No hitNo description
PfamPF000467.2E-16167221IPR001356Homeobox domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
PfamPF021832.9E-11223257IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.7E-27223266IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGEKDDDGLG LGLSLSLGIF GGTTTTATTH TTTHQPGSSS SSSLKFNLMQ KPSSSSMQYQ  60
QKTTNTTATP WNEIFQLSDR NSDGRSFLRG LDVNLTPSFA AAAAADYDEE NGVSSPNSTI  120
SSISGKKSER EAPGGEEAEE GDRDSCSRGG GGSDDEDGGN GGGDASRKKL RLTKDQSLIL  180
EETFKEHNTL NPKQKLALAK ELNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCENLT  240
EENRRLQKEV QELRALKLSP QLYMHMSPPT TLTMCPSCER VAASSSLSST AAAAPNGSNR  300
QPAVPSIPRP VPINPWAALP IPHRPLDTPA SRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171SRKKLRL
2215223RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089303.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297201e-119KP229720.1 UNVERIFIED: Boehmeria nivea Homeobox-leucine zipper protein-like (HDZIP21) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089303.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-111HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLW9QQ840.0W9QQ84_9ROSA; Homeobox-leucine zipper protein HAT3
STRINGXP_010089303.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.14e-82homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]