PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010089231.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GRAS

Protein Properties

Length: 537aa MW: 60002.3 Da PI: 4.6588

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010089231.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365	1e-111	155	530	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalklfsevsP 89 lv+ Ll+cAeav +d++la ++L+++ l+sp gd++qR+ +f+ +L++rl+ + ++ ++ +++++ +e++ a++l+++++P XP_010089231.1 155 LVHMLLACAEAVGCRDTQLAGSMLSQIWALVSPFGDSLQRVSYCFATGLNSRLSLlQNVNTNGTFMIGGAADTEsslitKEEKMEAFQLLYQTTP 249 689***********************************************987444444444433322222223677899999****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 ++ f++++aN+aI +a+ g++++HiiD+++++ lQWp+L+++LasRpegpp +lRiTg+++ +++ ele+ + L + A++lg+p++fn+l + XP_010089231.1 250 FIAFGFMVANEAICQAAVGKDHLHIIDLGMEHTLQWPSLIRTLASRPEGPPkMLRITGLVD-DHNLVIELEASMKVLVEEASSLGIPLQFNILSE 343 *******************************************998879****.667899********************944 PP GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 + + l+ e+L++++gEal Vn+ +lh+ ++es + + ++L+++k+l P++++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr XP_010089231.1 344 LvTPSLLTRENLDLREGEALYVNCFTHLHKYVKESRGSLK---AILQALKKLAPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPR 435 458999**********************88776666...9*********************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 +s +r+k+Er +++ei+n+va eg++r+erhe++ +Wr++l++aGF+ + l+ +qa+++l+ ++ dgy++ e+g+l+lgWk+rp++ +Sa XP_010089231.1 436 NSPQRMKIERLHFAEEIRNIVAFEGSSRIERHERVDQWRRQLGRAGFQVMGLK--CLSQARMMLSVYGCDGYTLAAEKGCLLLGWKGRPILLASA 528 *********************************************9985..89************************************ PP GRAS 373 Wr 374 W+ XP_010089231.1 529 WQ 530 *6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.045	129	512	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-109	155	530	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MEDLNFDNWI SFPSNKIMSF NHDLAIRRFC PARVEEEQGE WEEIFHEIEL CSPTDTTSTP 60 CLAASEIDEF VESIINTDHY DNSGIESPGE QRIGNEMEMF SMANNGVYED VPMMLEGDDN 120 LEISGSPVED FRVNVSNVVP SVEEVSHGVD QGLHLVHMLL ACAEAVGCRD TQLAGSMLSQ 180 IWALVSPFGD SLQRVSYCFA TGLNSRLSLL QNVNTNGTFM IGGAADTESS LITKEEKMEA 240 FQLLYQTTPF IAFGFMVANE AICQAAVGKD HLHIIDLGME HTLQWPSLIR TLASRPEGPP 300 KMLRITGLVD DHNLVIELEA SMKVLVEEAS SLGIPLQFNI LSELVTPSLL TRENLDLREG 360 EALYVNCFTH LHKYVKESRG SLKAILQALK KLAPTLLTVV EQDANHNGPF FLGRFLESLH 420 YYSAIFDSLE ASLPRNSPQR MKIERLHFAE EIRNIVAFEG SSRIERHERV DQWRRQLGRA 480 GFQVMGLKCL SQARMMLSVY GCDGYTLAAE KGCLLLGWKG RPILLASAWQ VHNVPSS

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MEDLNFDNWI SFPSNKIMSF NHDLAIRRFC PARVEEEQGE WEEIFHEIEL CSPTDTTSTP  60
CLAASEIDEF VESIINTDHY DNSGIESPGE QRIGNEMEMF SMANNGVYED VPMMLEGDDN  120
LEISGSPVED FRVNVSNVVP SVEEVSHGVD QGLHLVHMLL ACAEAVGCRD TQLAGSMLSQ  180
IWALVSPFGD SLQRVSYCFA TGLNSRLSLL QNVNTNGTFM IGGAADTESS LITKEEKMEA  240
FQLLYQTTPF IAFGFMVANE AICQAAVGKD HLHIIDLGME HTLQWPSLIR TLASRPEGPP  300
KMLRITGLVD DHNLVIELEA SMKVLVEEAS SLGIPLQFNI LSELVTPSLL TRENLDLREG  360
EALYVNCFTH LHKYVKESRG SLKAILQALK KLAPTLLTVV EQDANHNGPF FLGRFLESLH  420
YYSAIFDSLE ASLPRNSPQR MKIERLHFAE EIRNIVAFEG SSRIERHERV DQWRRQLGRA  480
GFQVMGLKCL SQARMMLSVY GCDGYTLAAE KGCLLLGWKG RPILLASAWQ VHNVPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-66	162	529	26	378	Protein SCARECROW
5b3h_A	3e-66	162	529	25	377	Protein SCARECROW
5b3h_D	3e-66	162	529	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010089231.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089231.1	0.0	DELLA protein RGL1
TrEMBL	W9QHI8	0.0	W9QHI8_9ROSA; Uncharacterized protein
STRING	XP_010089231.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13251	27	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	7e-75	RGA-like 1

Link Out ? help Back to Top
Entrez Gene	21387568