PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089049.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 298aa    MW: 33825.7 Da    PI: 7.0204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089049.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l+++++  G  +W++++++ g+ R++k+c+ rw++yl
   XP_010089049.1 14 RGLWSPEEDQKLIRYITANGYACWSRVPEKAGLQRCGKSCRFRWLNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding52.31.3e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE++l++ ++  lG+  W+ Ia++++ gRt++++k++w+++
   XP_010089049.1  67 RGSFTPEEEKLIISLHGALGNS-WAHIAKYLP-GRTDNEIKNYWNSW 111
                      89******************99.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.384961IPR017930Myb domain
SuperFamilySSF466898.61E-2812108IPR009057Homeodomain-like
SMARTSM007178.4E-101363IPR001005SANT/Myb domain
PfamPF002492.6E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-231568IPR009057Homeodomain-like
CDDcd001672.17E-81761No hitNo description
PROSITE profilePS5129425.06462116IPR017930Myb domain
SMARTSM007177.2E-1666114IPR001005SANT/Myb domain
PfamPF002497.3E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2569116IPR009057Homeodomain-like
CDDcd001671.37E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGHHHCCKER KVKRGLWSPE EDQKLIRYIT ANGYACWSRV PEKAGLQRCG KSCRFRWLNY  60
LRPDIKRGSF TPEEEKLIIS LHGALGNSWA HIAKYLPGRT DNEIKNYWNS WIQKKLNDQK  120
PSSPPVSTSS TNDDSKMAAG ADRRRRINFR IISNQDQSAN NHKAPVLLPE TTQNMFGTAA  180
EMLNKLEYSD QHQARAICND HDQPACAASS RLVTGCLDTN SMEALTAQAE DDLVPALEFQ  240
FRTTVSEEGH RDDDHQQINE LVDCSPFNNI STQKVMCFGD YRYFDEESLP PGGASSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141177109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089049.10.0transcription factor MYB61
SwissprotQ8VZQ21e-58MYB61_ARATH; Transcription factor MYB61
TrEMBLW9R3290.0W9R329_9ROSA; Transcription factor
STRINGXP_010089049.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.13e-72myb domain protein 103
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]