PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010088131.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NAC

Protein Properties

Length: 347aa MW: 39531.1 Da PI: 6.7394

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010088131.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.5	5.1e-57	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++++++ ++i evd++k+ePwdLp ++k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ XP_010088131.1 16 LPPGFRFHPTDEELITHYLSPKVLNNRFSA-TAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCQRDRKYPTGLRTNRATEAGYWKATGKDKEIYK- 108 79************************99.88***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfykgrap+gek++Wvmheyrle XP_010088131.1 109 AKSLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 142 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-63	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.017	16	166	IPR003441	NAC domain
Pfam	PF02365	1.7E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MENALGVGNE DEHMELPPGF RFHPTDEELI THYLSPKVLN NRFSATAIGE VDLNKCEPWD 60 LPWRAKMGEK EWYFFCQRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK SLVGMKKTLV 120 FYKGRAPRGE KSNWVMHEYR LEGKYSLYNL AKTTKNEWVI CRIFEKSSGG KKTHISGLVR 180 LSSYGNDLGP SLLPPLMDSP SYDNNNNRND MRTAVGKMTS SSHVTCFSDP MEDQKSHEKD 240 MTETSFNNNN NNNPSSSFPF YSNQIPQSFM NLSYADSVLM QDQSVLSLLL ETHATGTKRS 300 AKTEFSHETD VSSSMVSHHD MAQRSFEDQN DPSSSAGPVD LDCLWNY

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MENALGVGNE DEHMELPPGF RFHPTDEELI THYLSPKVLN NRFSATAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCQRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK SLVGMKKTLV  120
FYKGRAPRGE KSNWVMHEYR LEGKYSLYNL AKTTKNEWVI CRIFEKSSGG KKTHISGLVR  180
LSSYGNDLGP SLLPPLMDSP SYDNNNNRND MRTAVGKMTS SSHVTCFSDP MEDQKSHEKD  240
MTETSFNNNN NNNPSSSFPF YSNQIPQSFM NLSYADSVLM QDQSVLSLLL ETHATGTKRS  300
AKTEFSHETD VSSSMVSHHD MAQRSFEDQN DPSSSAGPVD LDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	5	172	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	5	172	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	5	172	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	5	172	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-54	5	172	4	171	NAC domain-containing protein 19
4dul_B	1e-54	5	172	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010088131.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088131.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-136	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	W9QF26	0.0	W9QF26_9ROSA; NAC domain-containing protein 100
STRING	XP_010088131.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-124	NAC domain containing protein 100

Link Out ? help Back to Top
Entrez Gene	21396746

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]