PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010087870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 519aa MW: 56508.6 Da PI: 6.5877 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.7e-17 | 178 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_010087870.1 178 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 227 78*******************......55************************997 PP | |||||||
2 | AP2 | 44.2 | 4.7e-14 | 270 | 320 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t++eAa+a+++a+ k +g XP_010087870.1 270 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEQEAARAYDKAAIKCNG 320 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.89E-16 | 178 | 237 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.1E-9 | 178 | 227 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-33 | 179 | 241 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 179 | 235 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-11 | 179 | 237 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-17 | 179 | 236 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 270 | 330 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.77E-26 | 270 | 330 | No hit | No description |
Pfam | PF00847 | 8.0E-10 | 270 | 320 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-32 | 271 | 334 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-17 | 271 | 329 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.226 | 271 | 328 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 272 | 283 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 310 | 330 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MLDLNVNVVA ADSTCDEEEA EMVIMEVREG SRSAPMEDSG SPNSSVVNAE FEAPNSSNAG 60 DEVLDSNSNN TEALIFDILK KEKDGLEDRI SISPSPPGFV TRSFFPVASG EAERCVATAA 120 VSGYLSSSSR PQWLNLSFAD SAGAGQVAPA PAAPVELRVM QQKQQVKKSR RGPRSRSSQY 180 RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNVSDYE 240 EDVKQMKNLS KEEFVQILRR QSTGFARGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL 300 FDTEQEAARA YDKAAIKCNG REAVTNFEHS TYQGEIILDS NAQGIDHNLD LNLGISPPSV 360 EPKGKDSLGE SRFHWNACEV PNRVKPMIDG QSPHVIAVTS NHTSATCSGI YPGFLSKHEE 420 RASATDHQKR AVEAVNSSPR FLNWAWKIHG SNGSTATSNG VTAMPVFSNA ASSGFSSSIT 480 SAAPSATSPP QNLQNTFAPN SASLTCRPPT FTEAEYQTP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010087870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229625 | 1e-123 | KP229625.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF02) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087870.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | B8AXC3 | 1e-102 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | W9QLI3 | 0.0 | W9QLI3_9ROSA; Floral homeotic protein APETALA 2 | ||||
STRING | XP_010087870.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-108 | related to AP2.7 |
Link Out ? help Back to Top | |
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Entrez Gene | 21385338 |