PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087414.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

TCP

Protein Properties

Length: 555aa MW: 59050.4 Da PI: 7.8858

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087414.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.3	2.8e-38	159	270	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ XP_010087414.1 159 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAPpsksaphs 253 6799****************************************************************999877777777775444433333333 PP TCP 89 ................k 89 + XP_010087414.1 254 fhgalalaaahhhhhfD 270 33333333333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-40	163	315	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	164	218	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MDLADLQSNK QNTSNTNNSA RQQNQLLLHH HHHHHQQQQK QSSSSSSPQF VVPFDGRSSS 60 SGGGQGPPFM GSISIQAGLT ATAGTTSSSS SSSSSSSSSS TSTSTAPPHL VDASLAIATR 120 STPLVDSSKV KNNNSNNNNN DNLNQQQQQQ QLSIVPPPPV KRSTKDRHTK VDGRGRRIRM 180 PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST LNISLRSSGS 240 TLSAPPSKSA PHSFHGALAL AAAHHHHHFD EAGFAHAGLL GFHPQQNQQN QQTLMAEALP 300 SGDNNNNNGG GGGETTENYM RKRFREDLFK DDNSSSQSQQ QGEESSSSPS NKTFKQMPNK 360 QDPAAGSSAG LLRPSNLLPP TAMWAVAPSS GAGSTFWMLP VTAGTGVSPV APATSEQPHM 420 WTFPTPPPSH GSTLQAPLHF MPRFNLPGGI DFQGGGRGSQ LQLGSMLMQQ HPGAAAAQPP 480 QPSQQLGLGV SESNLGMLAA LNAYSRGGLN INSDHHQSHP LEHHQHQHQH QHQHQHQQHQ 540 SQATNSGDED PNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MDLADLQSNK QNTSNTNNSA RQQNQLLLHH HHHHHQQQQK QSSSSSSPQF VVPFDGRSSS  60
SGGGQGPPFM GSISIQAGLT ATAGTTSSSS SSSSSSSSSS TSTSTAPPHL VDASLAIATR  120
STPLVDSSKV KNNNSNNNNN DNLNQQQQQQ QLSIVPPPPV KRSTKDRHTK VDGRGRRIRM  180
PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST LNISLRSSGS  240
TLSAPPSKSA PHSFHGALAL AAAHHHHHFD EAGFAHAGLL GFHPQQNQQN QQTLMAEALP  300
SGDNNNNNGG GGGETTENYM RKRFREDLFK DDNSSSQSQQ QGEESSSSPS NKTFKQMPNK  360
QDPAAGSSAG LLRPSNLLPP TAMWAVAPSS GAGSTFWMLP VTAGTGVSPV APATSEQPHM  420
WTFPTPPPSH GSTLQAPLHF MPRFNLPGGI DFQGGGRGSQ LQLGSMLMQQ HPGAAAAQPP  480
QPSQQLGLGV SESNLGMLAA LNAYSRGGLN INSDHHQSHP LEHHQHQHQH QHQHQHQQHQ  540
SQATNSGDED PNNSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087414.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010087414.1	0.0	transcription factor TCP8
TrEMBL	W9QDC0	0.0	W9QDC0_9ROSA; Uncharacterized protein
STRING	XP_010087414.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-66	TCP family protein

Link Out ? help Back to Top
Entrez Gene	21401410