PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087392.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 295aa    MW: 33194.4 Da    PI: 6.0359
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087392.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.1e-17240272335
            GATA   3 nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C t +Tp+WRrgp g+k+LCnaCG++yrk+++
  XP_010087392.1 240 KCLTHTTPMWRRGPLGPKSLCNACGIKYRKQEE 272
                     6*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.4E-13231272IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.33E-11231274No hitNo description
SMARTSM004011.3E-13232284IPR000679Zinc finger, GATA-type
CDDcd002022.61E-10235269No hitNo description
PfamPF003206.3E-15240272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.712241268IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDRFQRIQQA SEMKKLQYNN NYSNQAGFVD LTLRLGMPNH DYSDINNPTE ICQSSLNSNY  60
LFSLCHFNGS HMSSTTHDQP LMQYWQYGHN RMVSGDHITD NGYYNMINNT SGGVPSNYFG  120
RIFNQTGTNL GHQIINTGPD QVFSEGPHYT YSTPNSSTFN AITSNPYTST SISPAIMKNN  180
IDLLCTRSRG QSSLRKNNRG KKQSEAVVVD VGEEEEEEEE EVEDDDDDDD DANKRCSNPK  240
CLTHTTPMWR RGPLGPKSLC NACGIKYRKQ EERIRAAEKI AAAKTGNTST ISNLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023017.13e-55transcription factor stalky
TrEMBLW9QK790.0W9QK79_9ROSA; GATA transcription factor 29
STRINGXP_010087392.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-14GATA transcription factor 29