PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087232.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GRAS

Protein Properties

Length: 607aa MW: 69231.6 Da PI: 6.5942

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087232.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	271.9	2e-83	227	605	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn........sseelaal..... 81 lv+ Ll++Ae v +++ +a++lL++ + +a+++ +p++R++a+f+ AL++r+ r+ +++++ +p++ + XP_010087232.1 227 LVHILLAAAEKVGFQQFDRATRLLQNCEVIAASRSNPVERVVAVFAGALRERIERENGSMFNSStRPKR----VvfveknlaE------Ndeitq 311 689**************************************************55444433213332....2221122331......133334 PP GRAS 82 ....kl....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLak 167 +l +++ P+l++ ++ a qaI+e++e ++++H iD++i G+QW L+qaLa+R+e p l+iT++g k+++eet++rL + XP_010087232.1 312 glstNLatlrYHQQVPFLQVMQFPAIQAIVESFEPATKLHLIDLEIRSGIQWTGLMQALAAREERPIeLLKITAIGV---RGKQKIEETRKRLVS 403 4444225668*************************************************6665499***...589******** PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 +Ae+l++ f+fn+++++++ed++ e ++++++E+++V+++l l ++l ++++le+ +++++++l+P ++vv+e eadhns+sF++rf+e l XP_010087232.1 404 LAESLNLLFSFNAVIVSDMEDIKEELFEIDRNETVIVHSSLFLRTMLWRPHCLEK----LMRVIRNLRPSMMVVAEVEADHNSPSFARRFIEVLF 494 *************************************************99....******************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356 +y+a+fd+le+ + + ++ r+++E+ l+ i+n+va+e +er+ r+ + + Wr+ ++++G+ +++ls++ qa+l+ ++++ ++ ++e + + XP_010087232.1 495 FYAAFFDCLETCI-NLEDFRTTMEEI-LAVGIKNMVATERSERIYRNVRINVWRAFFTRFGMVEIKLSDSSHYQASLVAKQFGcGNSCTLERNGK 587 *******97.677899999999.99**************************************************9999**** PP GRAS 357 slvlgWkdrpLvsvSaWr 374 +l+ gWk+ ++ s+SaW+ XP_010087232.1 588 CLMVGWKGTAIHSFSAWK 605 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.019	201	584	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-81	227	605	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MANDHHSFYL SSPFNFDEIQ GGNYVPISDH HQDEEPIFSV NKAKNDHLLG LEDHGDHDLS 60 VDYHQYGNNF TGQKGQADHQ FSKDQDQQQQ RSIFDDFDTS SIFLPTQPTE EISTSSTFST 120 THNIVEAIKQ KPIQTPLSSL KLLSNNRNAF NKLKIENFIT KLPQSSSYNK TYSLRQKLST 180 EDIVRIAGAR YIQFSDQGNY HGYCTPLHPF GCALSGLSDG ETKDVELVHI LLAAAEKVGF 240 QQFDRATRLL QNCEVIAASR SNPVERVVAV FAGALRERIE RENGSMFNSS TRPKRVVFVE 300 KNLAENDEIT QGLSTNLATL RYHQQVPFLQ VMQFPAIQAI VESFEPATKL HLIDLEIRSG 360 IQWTGLMQAL AAREERPIEL LKITAIGVRG KQKIEETRKR LVSLAESLNL LFSFNAVIVS 420 DMEDIKEELF EIDRNETVIV HSSLFLRTML WRPHCLEKLM RVIRNLRPSM MVVAEVEADH 480 NSPSFARRFI EVLFFYAAFF DCLETCINLE DFRTTMEEIL AVGIKNMVAT ERSERIYRNV 540 RINVWRAFFT RFGMVEIKLS DSSHYQASLV AKQFGCGNSC TLERNGKCLM VGWKGTAIHS 600 FSAWKFL

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MANDHHSFYL SSPFNFDEIQ GGNYVPISDH HQDEEPIFSV NKAKNDHLLG LEDHGDHDLS  60
VDYHQYGNNF TGQKGQADHQ FSKDQDQQQQ RSIFDDFDTS SIFLPTQPTE EISTSSTFST  120
THNIVEAIKQ KPIQTPLSSL KLLSNNRNAF NKLKIENFIT KLPQSSSYNK TYSLRQKLST  180
EDIVRIAGAR YIQFSDQGNY HGYCTPLHPF GCALSGLSDG ETKDVELVHI LLAAAEKVGF  240
QQFDRATRLL QNCEVIAASR SNPVERVVAV FAGALRERIE RENGSMFNSS TRPKRVVFVE  300
KNLAENDEIT QGLSTNLATL RYHQQVPFLQ VMQFPAIQAI VESFEPATKL HLIDLEIRSG  360
IQWTGLMQAL AAREERPIEL LKITAIGVRG KQKIEETRKR LVSLAESLNL LFSFNAVIVS  420
DMEDIKEELF EIDRNETVIV HSSLFLRTML WRPHCLEKLM RVIRNLRPSM MVVAEVEADH  480
NSPSFARRFI EVLFFYAAFF DCLETCINLE DFRTTMEEIL AVGIKNMVAT ERSERIYRNV  540
RINVWRAFFT RFGMVEIKLS DSSHYQASLV AKQFGCGNSC TLERNGKCLM VGWKGTAIHS  600
FSAWKFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-28	235	604	27	378	Protein SCARECROW
5b3h_A	1e-28	235	604	26	377	Protein SCARECROW
5b3h_D	1e-28	235	604	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087232.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019575.1	0.0	DELLA protein RGL1
TrEMBL	W9QJV0	0.0	W9QJV0_9ROSA; Uncharacterized protein
STRING	XP_010087232.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-56	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	21393060